NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	NP445_RS16305	Genome accession	NZ_CP101938
Coordinates	3115595..3116191 (+)	Length	198 a.a.
NCBI ID	WP_024719872.1	Uniprot ID	A0A2G8ISB7
Organism	Bacillus altitudinis strain BDGP7
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3110595..3121191

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NP445_RS16285 (NP445_16285)	-	3112034..3113203 (-)	1170	WP_144666138.1	macrolide family glycosyltransferase	-
NP445_RS16290 (NP445_16290)	-	3113371..3114261 (-)	891	WP_039169106.1	ABC transporter substrate-binding protein	-
NP445_RS16295 (NP445_16295)	-	3114491..3114955 (-)	465	WP_096881887.1	DinB family protein	-
NP445_RS16305 (NP445_16305)	clpP	3115595..3116191 (+)	597	WP_024719872.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
NP445_RS16310 (NP445_16310)	-	3116247..3116825 (-)	579	WP_256688733.1	TIGR00730 family Rossman fold protein	-
NP445_RS16315 (NP445_16315)	-	3116962..3117303 (+)	342	WP_017368102.1	MazG nucleotide pyrophosphohydrolase domain-containing protein	-
NP445_RS16320 (NP445_16320)	-	3117332..3118954 (-)	1623	WP_041507806.1	SulP family inorganic anion transporter	-
NP445_RS16325 (NP445_16325)	-	3118992..3119573 (-)	582	WP_096881889.1	carbonic anhydrase	-
NP445_RS16330 (NP445_16330)	-	3120129..3121106 (+)	978	WP_039169103.1	D-glycerate dehydrogenase	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21832.00 Da Isoelectric Point: 4.6905

                                >NTDB_id=713414 NP445_RS16305 WP_024719872.1 3115595..3116191(+) (clpP) [Bacillus altitudinis strain BDGP7]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ

PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNSEEQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=713414 NP445_RS16305 WP_024719872.1 3115595..3116191(+) (clpP) [Bacillus altitudinis strain BDGP7]

ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA

CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTATCACAGCTTCTCTTCTTAGAAGCCG

AGGATCCAGAAAAAGATATCTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG

ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG

TGAAAAAGGTAAGCGTTATGCCCTTCCAAATAGTGAAGTGATGATTCACCAACCACTAGGTGGTGCCCAAGGTCAAGCAA

CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG

CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA

CAAAGTCTTGACCCGTAATTCTGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A2G8ISB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	92.929	100	0.929
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.539	96.465	0.652
clpP	Streptococcus thermophilus LMG 18311	58.549	97.475	0.571
clpP	Streptococcus thermophilus LMD-9	58.549	97.475	0.571
clpP	Lactococcus lactis subsp. cremoris KW2	56.701	97.98	0.556
clpP	Streptococcus pneumoniae Rx1	56.186	97.98	0.551
clpP	Streptococcus pneumoniae D39	56.186	97.98	0.551
clpP	Streptococcus pneumoniae R6	56.186	97.98	0.551
clpP	Streptococcus pneumoniae TIGR4	56.186	97.98	0.551
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Streptococcus mutans UA159	54.639	97.98	0.535
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.639	97.98	0.535

Detailed information NTG0713414