Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NP445_RS16730 Genome accession   NZ_CP101938
Coordinates   3200548..3201927 (-) Length   459 a.a.
NCBI ID   WP_370529242.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BDGP7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3195548..3206927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP445_RS16695 (NP445_16695) flgL 3195731..3196642 (-) 912 WP_256688749.1 flagellar hook-associated protein FlgL -
  NP445_RS16700 (NP445_16700) flgK 3196651..3198171 (-) 1521 WP_256688750.1 flagellar hook-associated protein FlgK -
  NP445_RS16705 (NP445_16705) - 3198187..3198669 (-) 483 WP_256688751.1 flagellar protein FlgN -
  NP445_RS16710 (NP445_16710) flgM 3198688..3198951 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NP445_RS16715 (NP445_16715) - 3199031..3199450 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  NP445_RS16720 (NP445_16720) - 3199507..3200229 (-) 723 WP_285891443.1 ComF family protein -
  NP445_RS16725 (NP445_16725) - 3200190..3200483 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  NP445_RS16730 (NP445_16730) comFA 3200548..3201927 (-) 1380 WP_370529242.1 DEAD/DEAH box helicase Machinery gene
  NP445_RS16735 (NP445_16735) - 3202047..3202889 (-) 843 WP_024719242.1 DegV family protein -
  NP445_RS16740 (NP445_16740) degU 3203100..3203789 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NP445_RS16745 (NP445_16745) degS 3203854..3205029 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  NP445_RS16750 (NP445_16750) - 3205251..3205919 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52542.14 Da        Isoelectric Point: 9.9420

>NTDB_id=713415 NP445_RS16730 WP_370529242.1 3200548..3201927(-) (comFA) [Bacillus altitudinis strain BDGP7]
MNLEKAMELSHKLQSRYLLPVECQCTQSELEWLENQGFIHRTPAVDRVSSGLICCRCGVSNKRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRQIELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=713415 NP445_RS16730 WP_370529242.1 3200548..3201927(-) (comFA) [Bacillus altitudinis strain BDGP7]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGTACCTTCTTCCTGTTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCTGTCGATAGGGTGTCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTATCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACAAATTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGACAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATTCAAA
ACAAATTTGATCTGCTCGTTTGGGCAGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGTATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTCGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAAGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGG
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGGT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACGATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTATTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.349

97.386

0.51