Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CHBNTHi_RS09225 Genome accession   NZ_AP018781
Coordinates   1840521..1842050 (+) Length   509 a.a.
NCBI ID   WP_110437640.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-V-1 isolate 13H43     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1835521..1847050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHBNTHi_RS09200 (CHBNV1_17620) oppC 1835867..1836802 (+) 936 WP_005647622.1 oligopeptide ABC transporter permease OppC -
  CHBNTHi_RS09205 (CHBNV1_17630) - 1836812..1837783 (+) 972 WP_005647625.1 ABC transporter ATP-binding protein -
  CHBNTHi_RS09210 (CHBNV1_17640) oppF 1837780..1838778 (+) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  CHBNTHi_RS09215 (CHBNV1_17650) - 1838818..1839684 (-) 867 WP_005670794.1 VirK/YbjX family protein -
  CHBNTHi_RS09220 (CHBNV1_17660) yihA 1839789..1840406 (+) 618 WP_105880818.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  CHBNTHi_RS09225 (CHBNV1_17670) comM 1840521..1842050 (+) 1530 WP_110437640.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CHBNTHi_RS09230 (CHBNV1_17680) deoC 1842084..1842755 (-) 672 WP_110437639.1 deoxyribose-phosphate aldolase -
  CHBNTHi_RS09235 (CHBNV1_17690) - 1842865..1843368 (+) 504 WP_005651783.1 protein disulfide oxidoreductase -
  CHBNTHi_RS09240 (CHBNV1_17700) rfaD 1843421..1844347 (+) 927 WP_110437638.1 ADP-glyceromanno-heptose 6-epimerase -
  CHBNTHi_RS09245 (CHBNV1_17710) xylB 1844398..1845879 (-) 1482 WP_192876854.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55975.51 Da        Isoelectric Point: 9.9541

>NTDB_id=71331 CHBNTHi_RS09225 WP_110437640.1 1840521..1842050(+) (comM) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGRLQN
TGDRGETSAQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDSFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=71331 CHBNTHi_RS09225 WP_110437640.1 1840521..1842050(+) (comM) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
ATGTCTCTTGCTATTGTTTACAGCCGTGCCTCTATGGGGGTGCAAGCACCACTTGTCACTATTGAGGTGCATTTAAGCAA
CGGAAAACCCGGATTTACACTTGTTGGTTTGCCCGAAAAAACCGTGAAAGAGGCACAAGATCGGGTACGTAGTGCATTGA
TGAATGCACAATTTAAATACCCAGCCAAACGCATTACCGTGAATCTCGCACCAGCAGATTTACCGAAAGAAGGCGGACGA
TTTGATTTGCCTATTGCCATCGGAATTTTAGCCGCATCGGATCAGCTTGATGCGAGCCGCTTAAAGCAATTTGAATTTGT
GGCTGAACTTGCGCTGACGGGCCAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCTCAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCTCAAACCCTT
TTAGACGTGGTGCAATTTCTCAATGGTCAGGAAAAATTACCCCTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATTGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCAG
GGCAGCATAATCTGCTCTTTCTTGGTCCTCCGGGCACAGGAAAAACGATGTTAGCTAGTCGATTAACAGGACTTTTACCT
GAAATGACGGATTTAGAAGCGATAGAAACGGCATCTGTAACGAGTTTAGTGCAAAACGAGTTAAATTTTCATAATTGGAA
ACAACGACCTTTTCGAGCCCCGCACCATAGTGCATCAATGCCAGCTTTAGTTGGTGGTGGGACGATCCCAAAACCTGGTG
AAATATCCTTAGCAACAAATGGGGTACTTTTTCTTGATGAACTTCCAGAATTTGAGCGAAAAGTGTTAGATGCGCTACGT
CAGCCTTTGGAAAGTGGCGAGATTATTATTTCTCGTGCTAATGCCAAAATTCAATTTCCGGCTCGTTTTCAATTAGTGGC
AGCGATGAATCCAAGCCCCACAGGTCATTATACTGGAACACATAACCGCACTTCTCCACAGCAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCATTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTACTGCCACAAGGTAGATTGCAAAAT
ACGGGCGATCGTGGCGAAACCAGCGCGCAAGTTCGTGAAAAAGTGTTAAAAGTACGTGAGATTCAAATGGAAAGAGCGGG
GAAAATCAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATTCCTTTTTCCTTGAAA
AAGCACTGAATAAACTGGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.018

100

0.99
  comM Glaesserella parasuis strain SC1401

78.895

99.607

0.786
  comM Vibrio cholerae strain A1552

67.258

99.607

0.67
  comM Vibrio campbellii strain DS40M4

65.878

99.607

0.656
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475

Multiple sequence alignment