Detailed information NTG0712704

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: NP430_RS27125
• Genome accession: NZ_CP101910
• Coordinates: 6029797..6031287 (+)
• Length: 496 a.a.
• NCBI ID: WP_016502197.1
• Uniprot ID: -
• Organism: Pseudomonas putida strain ATCC 12633
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6024797..6036287

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NP430_RS27105 (NP430_27105)	glnK	6026099..6026437 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
NP430_RS27110 (NP430_27110)	-	6026799..6027062 (+)	264	WP_016502194.1	accessory factor UbiK family protein	-
NP430_RS27115 (NP430_27115)	-	6027087..6027515 (+)	429	WP_016502195.1	molybdopterin-binding protein	-
NP430_RS27120 (NP430_27120)	-	6027521..6029539 (-)	2019	WP_016502196.1	DUF4034 domain-containing protein	-
NP430_RS27125 (NP430_27125)	comM	6029797..6031287 (+)	1491	WP_016502197.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
NP430_RS27130 (NP430_27130)	-	6031484..6033271 (+)	1788	WP_016502198.1	monovalent cation:proton antiporter-2 (CPA2) family protein	-
NP430_RS27135 (NP430_27135)	-	6033276..6033560 (-)	285	WP_016502199.1	HigA family addiction module antitoxin	-
NP430_RS27140 (NP430_27140)	-	6033573..6033851 (-)	279	WP_080642829.1	type II toxin-antitoxin system RelE/ParE family toxin	-
NP430_RS27145 (NP430_27145)	ycaC	6034323..6034952 (-)	630	WP_012274792.1	isochorismate family cysteine hydrolase YcaC	-
NP430_RS27150 (NP430_27150)	-	6035088..6035999 (+)	912	WP_016489788.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 496 a.a.
• Molecular weight: 52814.51 Da
• Isoelectric Point: 7.7103

>NTDB_id=712704 NP430_RS27125 WP_016502197.1 6029797..6031287(+) (comM) [Pseudomonas putida strain ATCC 12633]
MSLAIVHSRAQVGVQAPSVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPTASLAEVECLGELALSGKLRAVQGVLPAALAAREAGRSLVVPRENAEEASLAGGLVVYAVGHL
LELVAHLSGQVPLAPYAANGLVLHQRPYPDLSEVQGQLAAKRALMLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
EASADVAARVAQAREVQQRRQGCVNAFLDLEGLRRHCGLAAADQAWLEGACERLTLSLRAAHRLLKVARTLADLEGCEAI
GRPHLAEALQYRPGSS

Nucleotide

• Length: 1491 bp

>NTDB_id=712704 NP430_RS27125 WP_016502197.1 6029797..6031287(+) (comM) [Pseudomonas putida strain ATCC 12633]
ATGTCCCTAGCCATCGTCCACAGCCGCGCCCAGGTGGGTGTGCAGGCACCCTCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCTCATCTCACCCTGGTTGGCCTGCCAGAAACCACGGTCAAGGAAAGCAAGGACCGGGTACGCAGTGCCATCG
TCAACTCCGGGCTGAACTATCCACAGCGGCGCATAACCCAGAACCTGGCCCCCGCCGACTTGCCCAAGGACGGCGGGCGC
TACGACCTGGCCATTGCCCTGGGCATCCTGGCCGCCGACGGCCAGGTGCCCACGGCCAGCCTTGCAGAGGTCGAGTGCCT
GGGCGAACTGGCGTTGTCGGGCAAATTGCGGGCGGTGCAAGGCGTGCTGCCGGCGGCCTTGGCGGCACGCGAGGCGGGCC
GCTCGCTGGTGGTTCCACGGGAGAATGCCGAGGAAGCCAGCCTGGCCGGCGGGCTGGTGGTGTATGCGGTGGGGCACCTG
CTGGAGCTGGTCGCCCACCTGAGCGGCCAGGTGCCGCTGGCGCCTTACGCGGCCAACGGTTTGGTCCTGCATCAACGTCC
CTACCCTGACCTGAGCGAGGTGCAAGGCCAGCTGGCGGCCAAACGCGCATTGATGCTGGCGGCGGCTGGGGCGCACAACC
TGCTATTCACCGGGCCACCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCAGGGCTGCTGCCACCGTTGGACGAG
CACGAGGCACTTGAGGTGGCGGCCATCCAGTCGGTCAGCGGGCATACACCGCTCAGCAGCTGGCCGCAGCGCCCCTTTCG
CCACCCCCACCACTCCGCATCCGGCCCGGCACTGGTCGGTGGCAGCAGCCGTCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGGGTGCTGTTTCTCGATGAGCTGCCAGAGTTCGAGCGGCGTGTGCTGGAGGTACTGCGCGAGCCGCTGGAATCG
GGCGAGATCGTGATTGCCCGCGCCCGCGACAAGGTGCGCTTTCCGGCACGCTTTCAGCTGGTGGCGGCGATGAACCCATG
CCCTTGCGGCTACTTGGGCGACCCCACTGGCCGCTGCCGTTGCAGCACCGAGCAGATCGCGCGGTACCGCAACAAGCTGT
CCGGGCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTGGCCCGCGAAAGCACCACGCTGAACAACCAGCCCTGTGGT
GAAGCCAGTGCCGATGTGGCTGCAAGGGTGGCGCAGGCGCGGGAGGTACAGCAGCGCCGGCAAGGGTGTGTGAATGCGTT
TCTCGACCTCGAAGGGTTGCGCCGCCATTGCGGATTGGCCGCGGCGGACCAGGCCTGGCTGGAAGGGGCATGCGAACGGT
TGACGTTGTCGTTGCGGGCAGCGCACCGGTTATTGAAAGTGGCACGAACACTGGCGGACCTGGAGGGGTGCGAGGCGATT
GGCCGGCCACATCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterProScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (400-492)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-391)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	56.827	100	0.571
comM	Vibrio cholerae strain A1552	55.96	99.798	0.558
comM	Haemophilus influenzae Rd KW20	55.4	100	0.558
comM	Glaesserella parasuis strain SC1401	53.693	100	0.542
comM	Legionella pneumophila str. Paris	48.992	100	0.49
comM	Legionella pneumophila strain ERS1305867	48.992	100	0.49
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.521	100	0.472