Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K6J60_RS09140 Genome accession   NZ_AP018778
Coordinates   1796647..1798176 (+) Length   509 a.a.
NCBI ID   WP_005647634.1    Uniprot ID   A0A0Y7HS02
Organism   Haemophilus influenzae strain CHBN-III-7 isolate 15H01     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1791647..1803176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J60_RS09115 (CHBNIII7_17400) oppC 1791993..1792928 (+) 936 WP_005661282.1 oligopeptide ABC transporter permease OppC -
  K6J60_RS09120 (CHBNIII7_17410) - 1792938..1793909 (+) 972 WP_005651797.1 ABC transporter ATP-binding protein -
  K6J60_RS09125 (CHBNIII7_17420) oppF 1793906..1794904 (+) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  K6J60_RS09130 (CHBNIII7_17430) - 1794944..1795810 (-) 867 WP_192885176.1 VirK/YbjX family protein -
  K6J60_RS09135 (CHBNIII7_17440) yihA 1795915..1796532 (+) 618 WP_013526079.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  K6J60_RS09140 (CHBNIII7_17450) comM 1796647..1798176 (+) 1530 WP_005647634.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K6J60_RS09145 (CHBNIII7_17460) deoC 1798210..1798881 (-) 672 WP_221267303.1 deoxyribose-phosphate aldolase -
  K6J60_RS09150 (CHBNIII7_17470) - 1798992..1799495 (+) 504 WP_221267304.1 protein disulfide oxidoreductase -
  K6J60_RS09155 (CHBNIII7_17480) rfaD 1799548..1800474 (+) 927 WP_221267305.1 ADP-glyceromanno-heptose 6-epimerase -
  K6J60_RS09160 (CHBNIII7_17490) xylB 1800525..1802006 (-) 1482 WP_221267306.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55918.45 Da        Isoelectric Point: 9.8668

>NTDB_id=71226 K6J60_RS09140 WP_005647634.1 1796647..1798176(+) (comM) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSVQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=71226 K6J60_RS09140 WP_005647634.1 1796647..1798176(+) (comM) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCACCGCTAGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACAGTGAATCTCGCCCCTGCGGATTTACCGAAAGAAGGCGGAAGA
TTTGATTTGCCTATCGCCATCGGAATTTTAGCTGCATCGGATCAGCTTGATGCTAGTCGCTTAAAGCAATTTGAATTTGT
GGCTGAACTTGCGCTGACGGGCCAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCGCAAAAGTCAAAGC
GAGAGTTAATTATTGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCTCAAACGCTT
TTAGATGTAGTGCAATTTCTCAATGGTCAGGAAAAATTACCACTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATCGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCGG
GGCAGCATAATTTGCTCTTTCTTGGTCCTCCGGGCACAGGAAAAACGATGTTAGCTAGTCGATTAACAGGACTTTTACCT
GAAATGACGGATTTAGAAGCGATAGAAACGGCATCTGTAACGAGTTTAGTGCAAAACGAGTTAAATTTTCATAATTGGAA
ACAACGACCTTTTCGAGCCCCGCACCATAGTGCATCAATGCCAGCTTTAGTTGGTGGTGGGACGATCCCAAAACCAGGCG
AAATATCCTTAGCAACAAATGGGGTACTTTTTCTTGATGAACTTCCAGAATTTGAGCGAAAAGTGTTAGATGCACTACGC
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTCGTGCCAATGCAAAAATTCAATTCCCAGCTCGTTTTCAATTAGTGGC
AGCGATGAATCCAAGCCCCACAGGCCATTATACTGGGACACATAACCGCACTTCACCGCAACAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCATTTTTAGATCGTTTTGATTTGTCTATTGAAGTGCCTTTACTGCCACAAGGTAGCTTGCAAAAT
ACGGGCGATCGTGGCGAAACCAGCGTGCAAGTTCGTGAAAAAGTGTTAAAAGTACGTGAGATTCAAATGGAAAGAGCGGG
GAAAATCAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTGGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATTTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Y7HS02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.214

100

0.992
  comM Glaesserella parasuis strain SC1401

79.093

99.607

0.788
  comM Vibrio cholerae strain A1552

67.258

99.607

0.67
  comM Vibrio campbellii strain DS40M4

65.878

99.607

0.656
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475

Multiple sequence alignment