Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NOX82_RS30465 Genome accession   NZ_CP101752
Coordinates   6947386..6948873 (+) Length   495 a.a.
NCBI ID   WP_256513380.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain C12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6942386..6953873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOX82_RS30445 (NOX82_30445) - 6942557..6943891 (-) 1335 WP_074983180.1 ammonium transporter -
  NOX82_RS30450 (NOX82_30450) glnK 6943927..6944265 (-) 339 WP_003457590.1 P-II family nitrogen regulator -
  NOX82_RS30455 (NOX82_30455) - 6944810..6946840 (+) 2031 WP_249918417.1 acyltransferase family protein -
  NOX82_RS30460 (NOX82_30460) - 6946933..6947199 (+) 267 WP_009614069.1 accessory factor UbiK family protein -
  NOX82_RS30465 (NOX82_30465) comM 6947386..6948873 (+) 1488 WP_256513380.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NOX82_RS30470 (NOX82_30470) - 6948877..6949107 (-) 231 WP_058488049.1 DUF1127 domain-containing protein -
  NOX82_RS30475 (NOX82_30475) - 6949282..6950733 (+) 1452 WP_058488048.1 PLP-dependent aminotransferase family protein -
  NOX82_RS30480 (NOX82_30480) - 6951068..6951877 (+) 810 WP_256513382.1 prolipoprotein diacylglyceryl transferase family protein -
  NOX82_RS30485 (NOX82_30485) - 6952129..6952308 (+) 180 Protein_6022 Com family DNA-binding transcriptional regulator -
  NOX82_RS30490 (NOX82_30490) - 6952363..6952707 (+) 345 WP_249920264.1 hypothetical protein -
  NOX82_RS30495 (NOX82_30495) - 6952833..6953060 (+) 228 WP_256513383.1 hypothetical protein -
  NOX82_RS30500 (NOX82_30500) - 6953057..6953410 (+) 354 WP_256513384.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52172.86 Da        Isoelectric Point: 7.7781

>NTDB_id=711986 NOX82_RS30465 WP_256513380.1 6947386..6948873(+) (comM) [Pseudomonas citronellolis strain C12]
MSLAIVHSRAQVGVEAPGVTVEAHLANGLPSLTLVGLPETAVKESKDRVRSAILNSGFEFPARRITLNLAPADLPKDGGR
FDLAIALGLLAANGQLAGASLDGLECLGELALSGALRPVQGVLPAALAARAAGRALVVPKENAEEASLAGGLTVYAVGHL
LELAAHLTGQTPLAPYQARGLLRETPPYPDLAEVQGQAAAKRALLVAAAGSHNLLLSGPPGTGKTLLASRLPGLLPPLSE
DEALQVAAIHSVSGRGPLTHWPQRPFRQPHHSASAAALVGGGSRPQPGEITLAHEGVLFLDELPEFDRKVLEVLREPLEG
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVGRETTRLVPQSGS
LGSAEVAAQVASARERQLARQGCANAVLDLKSMHHNCALDNQDQAWLETAGERLDLSLRALHRILKVARTLADLEGAERI
ARPHLAEALQYRAGH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=711986 NOX82_RS30465 WP_256513380.1 6947386..6948873(+) (comM) [Pseudomonas citronellolis strain C12]
ATGTCCCTGGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAGGCTCCCGGTGTCACCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCGTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCAATTCCGGCTTCGAATTCCCCGCCCGGCGCATCACCCTCAACCTCGCCCCGGCCGACCTGCCCAAGGACGGCGGACGC
TTCGACCTGGCCATCGCCCTGGGCCTGCTCGCCGCCAACGGCCAGTTGGCCGGCGCCAGCCTGGACGGCCTCGAATGCCT
CGGTGAACTGGCCCTGTCCGGCGCCCTGCGCCCGGTGCAGGGCGTGCTACCGGCCGCCCTGGCGGCACGCGCCGCCGGCC
GCGCCCTGGTGGTGCCGAAGGAGAATGCCGAGGAAGCAAGCCTGGCCGGCGGCCTGACCGTCTACGCCGTGGGCCACCTG
CTGGAGCTGGCCGCGCACCTGACCGGCCAGACGCCCCTGGCGCCCTACCAGGCCCGCGGCCTGCTGCGGGAAACCCCGCC
CTACCCCGACCTCGCCGAGGTCCAGGGCCAGGCCGCAGCCAAGCGCGCGCTGCTGGTGGCCGCGGCCGGGTCGCACAACC
TTTTGCTGAGCGGCCCGCCGGGCACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCGGGGCTGCTGCCGCCGCTGAGCGAA
GACGAGGCGCTGCAGGTGGCGGCTATCCACTCCGTGTCCGGGCGCGGGCCGCTGACGCACTGGCCGCAGCGCCCGTTCCG
CCAGCCACACCATAGCGCCTCGGCAGCCGCGCTGGTTGGTGGCGGAAGCCGGCCGCAACCCGGGGAGATCACCCTGGCCC
ACGAAGGCGTGCTGTTCCTCGACGAGCTGCCGGAGTTCGATCGCAAGGTCCTGGAAGTGCTCCGCGAGCCCCTGGAAGGG
GGCGAAATCGTGATCGCCCGGGCCAATGGCCGGGTGCGCTTCCCCGCGCGCTTCCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACCCCAGCGGCCGCTGCCGTTGCACCCCGGAGCAGATCCAACGCTACCGCGCCAAGCTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACAGTGGGCCGCGAAACTACGCGCCTCGTCCCTCAGAGTGGCAGC
CTGGGCAGCGCCGAGGTCGCCGCGCAGGTGGCCAGCGCCCGCGAACGGCAACTGGCGCGACAGGGTTGCGCGAACGCCGT
CCTCGACCTCAAATCAATGCACCATAATTGTGCGCTGGACAATCAGGACCAGGCCTGGCTGGAAACCGCCGGCGAGCGTC
TGGACCTGTCCCTGCGCGCCCTGCACCGCATCCTCAAGGTCGCCCGCACCCTGGCCGACCTGGAAGGCGCCGAACGCATC
GCCCGGCCGCACCTGGCCGAGGCCCTGCAATACCGCGCCGGGCACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.258

100

0.574
  comM Vibrio campbellii strain DS40M4

57.056

100

0.572
  comM Haemophilus influenzae Rd KW20

54.813

100

0.564
  comM Glaesserella parasuis strain SC1401

53.36

100

0.545
  comM Legionella pneumophila str. Paris

50.099

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.099

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.473