Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K6J69_RS09280 Genome accession   NZ_AP018777
Coordinates   1868015..1868362 (-) Length   115 a.a.
NCBI ID   WP_163467077.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-6 isolate 13H31     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1863015..1873362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J69_RS09260 (CHBNIII6_17860) bioB 1863407..1864405 (-) 999 WP_105899270.1 biotin synthase BioB -
  K6J69_RS09265 (CHBNIII6_17870) thiQ 1864518..1865165 (-) 648 WP_005690819.1 thiamine ABC transporter ATP-binding protein -
  K6J69_RS09270 (CHBNIII6_17880) thiP 1865149..1866765 (-) 1617 WP_105899271.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  K6J69_RS09275 (CHBNIII6_17890) thiB 1866770..1867768 (-) 999 WP_014550965.1 thiamine ABC transporter substrate binding subunit -
  K6J69_RS09280 (CHBNIII6_17900) comE1/comEA 1868015..1868362 (-) 348 WP_163467077.1 helix-hairpin-helix domain-containing protein Machinery gene
  K6J69_RS09285 (CHBNIII6_17910) ispH 1868531..1869475 (-) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K6J69_RS09290 (CHBNIII6_17920) lspA 1869472..1869987 (-) 516 WP_005651632.1 signal peptidase II -
  K6J69_RS09295 (CHBNIII6_17930) - 1870057..1871616 (-) 1560 WP_015701998.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12385.23 Da        Isoelectric Point: 8.0085

>NTDB_id=71191 K6J69_RS09280 WP_163467077.1 1868015..1868362(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQSVVTTQAEAQIALAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=71191 K6J69_RS09280 WP_163467077.1 1868015..1868362(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAATCTGTTGTGACAACTCAAGCTGAAGCTCAAATAGCACTAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

96.429

97.391

0.939
  comEA/comE1 Glaesserella parasuis strain SC1401

57.391

100

0.574
  comEA Vibrio cholerae C6706

40.909

95.652

0.391
  comEA Vibrio cholerae strain A1552

40.909

95.652

0.391
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383

Multiple sequence alignment