Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K6J69_RS08810 Genome accession   NZ_AP018777
Coordinates   1768947..1770476 (+) Length   509 a.a.
NCBI ID   WP_110431264.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-6 isolate 13H31     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1763947..1775476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J69_RS08785 (CHBNIII6_16910) oppC 1764293..1765228 (+) 936 WP_005661282.1 oligopeptide ABC transporter permease OppC -
  K6J69_RS08790 (CHBNIII6_16920) - 1765238..1766209 (+) 972 WP_005647625.1 ABC transporter ATP-binding protein -
  K6J69_RS08795 (CHBNIII6_16930) oppF 1766206..1767204 (+) 999 WP_110431262.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  K6J69_RS08800 (CHBNIII6_16940) - 1767244..1768110 (-) 867 WP_192876608.1 VirK/YbjX family protein -
  K6J69_RS08805 (CHBNIII6_16950) yihA 1768215..1768832 (+) 618 WP_110431263.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  K6J69_RS08810 (CHBNIII6_16960) comM 1768947..1770476 (+) 1530 WP_110431264.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K6J69_RS08815 (CHBNIII6_16970) deoC 1770510..1771181 (-) 672 WP_110431265.1 deoxyribose-phosphate aldolase -
  K6J69_RS08820 (CHBNIII6_16980) - 1771291..1771794 (+) 504 WP_110431266.1 protein disulfide oxidoreductase -
  K6J69_RS08825 (CHBNIII6_16990) rfaD 1771847..1772773 (+) 927 WP_110431267.1 ADP-glyceromanno-heptose 6-epimerase -
  K6J69_RS08830 (CHBNIII6_17000) xylB 1772824..1774305 (-) 1482 WP_192876609.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55831.42 Da        Isoelectric Point: 10.0945

>NTDB_id=71190 K6J69_RS08810 WP_110431264.1 1768947..1770476(+) (comM) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPIATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVRKKVLKVREIQMARAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=71190 K6J69_RS08810 WP_110431264.1 1768947..1770476(+) (comM) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
ATGTCTCTTGCTATTGTTTACAGCCGTGCCTCTATGGGGGTGCAAGCACCACTTGTCACTATTGAGGTGCATTTAAGCAA
CGGAAAACCCGGATTTACACTTGTTGGTTTGCCCGAAAAAACCGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCATTGA
TGAATGCACAATTTAAATACCCAGCCAAACGCATTACCGTGAATCTCGCACCAGCAGATTTACCGAAAGAAGGTGGACGA
TTTGATTTGCCTATTGCCATCGGAATTTTAGCCGCATCGGATCAGCTTGATGCGAGCCGCTTAAAGCAATTTGAATTTGT
GGCAGAGCTTGCGCTTACTGGGCAATTGCGTGGCGTTCACGGCGTAATTCCCGCTATTCTTGCAGCACAAAAATCAAAGC
GAGAATTAATTATCGCAAAGCAAAATGCCAATGAAGCCTCGCTTGTTTCTGATCAAAATACTTATTTTGCGCAAACACTT
TTAGACGTAGTGCAATTTCTCAATGGTCAGGAAAAATTACCTATCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCGGGTAAAAATACATTAGATTTAACGGATATTATTGGACAACAGCACGCTAAACGTGCATTAACCATTGCCGCAGCGG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGAAAAACCATGTTAGCTAGCCGATTAACAGGGCTTTTACCT
GAAATGACTGATTTAGAAGCGATAGAAACGGCATCTGTAACGAGTTTAGTTCAAAACGAGCTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGCGCACCGCACCATAGTGCATCAATGCCGGCTTTAGTTGGAGGCGGAACGATCCCTAAACCTGGCG
AAATATCCTTAGCCACAAATGGCGTACTTTTTCTTGATGAACTTCCAGAGTTTGAACGAAAAGTGTTAGATGCGCTACGT
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTCGTGCTAATGCAAAAATTCAATTCCCGGCTCGTTTTCAATTGGTGGC
AGCGATGAATCCAAGCCCCACAGGTCATTATACTGGAACACATAACCGCACTTCGCCGCAACAAATTATGCGTTATTTAA
ATCGACTTTCAGGGCCCTTTTTAGATCGCTTTGACTTGTCTATTGAAGTGCCTTTATTGCCACAAGGTAGCTTACAAAAT
ACGGGCGATCGTGGCGAAACCAGTGCACAAGTTCGTAAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGCAAGAGCGGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAACGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTTGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTGTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

98.821

100

0.988
  comM Glaesserella parasuis strain SC1401

79.487

99.607

0.792
  comM Vibrio cholerae strain A1552

67.456

99.607

0.672
  comM Vibrio campbellii strain DS40M4

65.878

99.607

0.656
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.602

100

0.472

Multiple sequence alignment