Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K6J69_RS03410 Genome accession   NZ_AP018777
Coordinates   685088..685885 (-) Length   265 a.a.
NCBI ID   WP_110430714.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-6 isolate 13H31     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 680088..690885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J69_RS03375 (CHBNIII6_06430) nfuA 680366..680962 (-) 597 WP_105896093.1 Fe-S biogenesis protein NfuA -
  K6J69_RS03380 (CHBNIII6_06440) - 681038..681724 (-) 687 WP_110430718.1 ComF family protein -
  K6J69_RS03385 (CHBNIII6_06450) tnpA 681848..682303 (-) 456 WP_105894588.1 IS200/IS605 family transposase -
  K6J69_RS03390 (CHBNIII6_06460) comE 682300..683643 (-) 1344 WP_110430717.1 type IV pilus secretin PilQ Machinery gene
  K6J69_RS03395 (CHBNIII6_06470) comD 683653..684066 (-) 414 WP_005669241.1 pilus assembly protein PilP Machinery gene
  K6J69_RS03400 (CHBNIII6_06480) comC 684063..684584 (-) 522 WP_110430716.1 competence protein ComC Machinery gene
  K6J69_RS03405 (CHBNIII6_06490) comB 684581..685087 (-) 507 WP_110430715.1 competence protein B Machinery gene
  K6J69_RS03410 (CHBNIII6_06500) comA 685088..685885 (-) 798 WP_110430714.1 pilus assembly protein PilM Machinery gene
  K6J69_RS03415 (CHBNIII6_06510) - 685984..688578 (+) 2595 WP_110430713.1 penicillin-binding protein 1A -
  K6J69_RS03420 (CHBNIII6_06520) - 688655..689500 (+) 846 WP_110430712.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J69_RS03425 (CHBNIII6_06530) - 689652..689981 (+) 330 WP_110430711.1 YbaB/EbfC family nucleoid-associated protein -
  K6J69_RS03430 (CHBNIII6_06540) recR 690044..690646 (+) 603 WP_005649310.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31456.74 Da        Isoelectric Point: 5.6305

>NTDB_id=71177 K6J69_RS03410 WP_110430714.1 685088..685885(-) (comA) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
MQFSLKNYLTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRDFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVLEKELPISLDELWFDYRSTSLKQGFRLDVTAIRKSTAQTYLQDFQPFKINVLDVASNAILRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPEHWQRV
ETELPFIALGNALWQKDLYQQKVGN

Nucleotide


Download         Length: 798 bp        

>NTDB_id=71177 K6J69_RS03410 WP_110430714.1 685088..685885(-) (comA) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
ATGCAATTCTCCCTGAAAAATTACCTCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAACAGCCACAAAGTTATCAAATTTTTGTTAATGATCGTGATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTACAGTTTGTGGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGCTTGAAAAAGAGCTGCCTATTTCTTT
AGATGAATTATGGTTTGATTATCGTTCTACCTCGTTAAAGCAAGGTTTTCGATTAGACGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGTTTGGCGAT
TTGTGAAAGATCGCAGCAATCGCAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGGCAACTTGAACAAGTTTTTGTGTATCAAATTCCCTCAAGTCATACGCCATTACCAGAACACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTGGGCAACGCGCTATGGCAAAAAGATTTATATCAACAAAAAGTAGGTAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

97.736

100

0.977
  comA Haemophilus influenzae Rd KW20

94.34

100

0.943

Multiple sequence alignment