Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   K6J69_RS03400 Genome accession   NZ_AP018777
Coordinates   684063..684584 (-) Length   173 a.a.
NCBI ID   WP_110430716.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-6 isolate 13H31     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 679063..689584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J69_RS03370 (CHBNIII6_06420) nudC 679504..680298 (-) 795 WP_110430719.1 NAD(+) diphosphatase -
  K6J69_RS03375 (CHBNIII6_06430) nfuA 680366..680962 (-) 597 WP_105896093.1 Fe-S biogenesis protein NfuA -
  K6J69_RS03380 (CHBNIII6_06440) - 681038..681724 (-) 687 WP_110430718.1 ComF family protein -
  K6J69_RS03385 (CHBNIII6_06450) tnpA 681848..682303 (-) 456 WP_105894588.1 IS200/IS605 family transposase -
  K6J69_RS03390 (CHBNIII6_06460) comE 682300..683643 (-) 1344 WP_110430717.1 type IV pilus secretin PilQ Machinery gene
  K6J69_RS03395 (CHBNIII6_06470) comD 683653..684066 (-) 414 WP_005669241.1 pilus assembly protein PilP Machinery gene
  K6J69_RS03400 (CHBNIII6_06480) comC 684063..684584 (-) 522 WP_110430716.1 competence protein ComC Machinery gene
  K6J69_RS03405 (CHBNIII6_06490) comB 684581..685087 (-) 507 WP_110430715.1 competence protein B Machinery gene
  K6J69_RS03410 (CHBNIII6_06500) comA 685088..685885 (-) 798 WP_110430714.1 pilus assembly protein PilM Machinery gene
  K6J69_RS03415 (CHBNIII6_06510) - 685984..688578 (+) 2595 WP_110430713.1 penicillin-binding protein 1A -
  K6J69_RS03420 (CHBNIII6_06520) - 688655..689500 (+) 846 WP_110430712.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20023.14 Da        Isoelectric Point: 8.5200

>NTDB_id=71175 K6J69_RS03400 WP_110430716.1 684063..684584(-) (comC) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
MKTFFNDPFSPFGKWLSQPVYIQSLTFLLLLSAVIFRPVLDYIEASEHFAETEYELAKKSSELLHQQKILTSLQQQSESR
KLSPELAAQIIPLNKQIQRLAARNGLSQHLRWEMGQQPILHLQLVGHFEKTKTFLTALLANTSQLSVSRLQFMKPEDNPL
QTEIIFQLDRETK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=71175 K6J69_RS03400 WP_110430716.1 684063..684584(-) (comC) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
ATGAAAACTTTTTTTAACGATCCTTTTAGTCCTTTTGGCAAATGGCTAAGTCAGCCTGTTTATATACAGAGTTTAACCTT
TTTGTTGTTATTAAGTGCGGTGATTTTTCGCCCTGTTTTAGATTATATCGAGGCTAGTGAGCATTTTGCTGAAACTGAAT
ATGAATTAGCAAAAAAAAGTTCGGAATTGCTACATCAACAGAAAATTTTAACTTCTTTACAGCAGCAATCGGAAAGTCGA
AAACTTTCTCCAGAACTGGCTGCACAAATTATTCCTTTGAATAAACAAATTCAACGTTTAGCTGCGCGTAACGGTTTATC
TCAGCATTTACGTTGGGAAATGGGGCAACAGCCTATTTTGCATTTACAGCTTGTGGGGCATTTTGAAAAAACGAAGACAT
TTTTAACCGCACTTTTAGCTAATACGTCACAGCTTTCTGTAAGTCGGCTGCAATTTATGAAACCCGAAGACAACCCATTG
CAAACCGAGATTATTTTTCAGTTAGATAGGGAGACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

89.017

100

0.89
  comC Haemophilus influenzae Rd KW20

88.439

100

0.884

Multiple sequence alignment