Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   K6J69_RS03395 Genome accession   NZ_AP018777
Coordinates   683653..684066 (-) Length   137 a.a.
NCBI ID   WP_005669241.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-6 isolate 13H31     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 678653..689066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J69_RS03365 (CHBNIII6_06410) - 678878..679468 (-) 591 WP_110430720.1 YjaG family protein -
  K6J69_RS03370 (CHBNIII6_06420) nudC 679504..680298 (-) 795 WP_110430719.1 NAD(+) diphosphatase -
  K6J69_RS03375 (CHBNIII6_06430) nfuA 680366..680962 (-) 597 WP_105896093.1 Fe-S biogenesis protein NfuA -
  K6J69_RS03380 (CHBNIII6_06440) - 681038..681724 (-) 687 WP_110430718.1 ComF family protein -
  K6J69_RS03385 (CHBNIII6_06450) tnpA 681848..682303 (-) 456 WP_105894588.1 IS200/IS605 family transposase -
  K6J69_RS03390 (CHBNIII6_06460) comE 682300..683643 (-) 1344 WP_110430717.1 type IV pilus secretin PilQ Machinery gene
  K6J69_RS03395 (CHBNIII6_06470) comD 683653..684066 (-) 414 WP_005669241.1 pilus assembly protein PilP Machinery gene
  K6J69_RS03400 (CHBNIII6_06480) comC 684063..684584 (-) 522 WP_110430716.1 competence protein ComC Machinery gene
  K6J69_RS03405 (CHBNIII6_06490) comB 684581..685087 (-) 507 WP_110430715.1 competence protein B Machinery gene
  K6J69_RS03410 (CHBNIII6_06500) comA 685088..685885 (-) 798 WP_110430714.1 pilus assembly protein PilM Machinery gene
  K6J69_RS03415 (CHBNIII6_06510) - 685984..688578 (+) 2595 WP_110430713.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15615.70 Da        Isoelectric Point: 4.4355

>NTDB_id=71174 K6J69_RS03395 WP_005669241.1 683653..684066(-) (comD) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=71174 K6J69_RS03395 WP_005669241.1 683653..684066(-) (comD) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae Rd KW20

95.62

100

0.956
  comD Haemophilus influenzae 86-028NP

94.891

100

0.949

Multiple sequence alignment