Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | NFC81_RS00370 | Genome accession | NZ_CP101717 |
| Coordinates | 81610..82737 (+) | Length | 375 a.a. |
| NCBI ID | WP_304995549.1 | Uniprot ID | A0AB38YFW1 |
| Organism | Salinispirillum sp. LH 10-3-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 76610..87737
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFC81_RS00345 (NFC81_00345) | - | 77033..78148 (-) | 1116 | WP_370529917.1 | homoserine O-acetyltransferase | - |
| NFC81_RS00350 (NFC81_00350) | - | 78298..78885 (-) | 588 | WP_304995545.1 | YggT family protein | - |
| NFC81_RS00355 (NFC81_00355) | proC | 78895..79731 (-) | 837 | WP_304995546.1 | pyrroline-5-carboxylate reductase | - |
| NFC81_RS00360 (NFC81_00360) | - | 79728..80471 (-) | 744 | WP_304995547.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| NFC81_RS00365 (NFC81_00365) | pilT | 80563..81597 (+) | 1035 | WP_304995548.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| NFC81_RS00370 (NFC81_00370) | pilU | 81610..82737 (+) | 1128 | WP_304995549.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| NFC81_RS00375 (NFC81_00375) | - | 82814..83206 (+) | 393 | WP_304995550.1 | hypothetical protein | - |
| NFC81_RS00380 (NFC81_00380) | trmB | 83260..83955 (-) | 696 | WP_304995551.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
| NFC81_RS00385 (NFC81_00385) | - | 83945..84310 (-) | 366 | WP_304995552.1 | DUF423 domain-containing protein | - |
| NFC81_RS00390 (NFC81_00390) | rpoH | 84400..85266 (-) | 867 | WP_304995553.1 | RNA polymerase sigma factor RpoH | - |
| NFC81_RS00395 (NFC81_00395) | ftsX | 85613..86599 (-) | 987 | WP_304995554.1 | permease-like cell division protein FtsX | - |
| NFC81_RS00400 (NFC81_00400) | ftsE | 86589..87275 (-) | 687 | WP_304995555.1 | cell division ATP-binding protein FtsE | - |
Sequence
Protein
Download Length: 375 a.a. Molecular weight: 41725.96 Da Isoelectric Point: 6.3718
>NTDB_id=711700 NFC81_RS00370 WP_304995549.1 81610..82737(+) (pilU) [Salinispirillum sp. LH 10-3-1]
MDFEALLRVMVDKGASDLFITAGVAPSIKVNGRIVPVTKSPLTPEQTREMVFAVMTEKQRREFTETQECNFAISARGIGR
FRVSAMHQRNLAAMVLRRIEVNIPQMDELRLPEVLKQLAMTKRGLVIFVGATGAGKSTSLAAMLGHRNRHSRGHIISIED
PIEFIHQHEGCIVTQREVGIDTDSFEIGLKNALRQAPDVIMIGEVRSTETMNYAIAFAETGHLCLATMHANNANQALDRI
MHFFPSEKQRQLWMDLSLNLRAIVAQQLIPTPDGKSRRAVVEVLLNTPLVSDLIRKGEVHALKDLMAKSNDVGMQTFDQA
LFELYSAGEITYEDALAHADSANDLRLMIKLDQEADSEHLQGRAAGLTIQSDDPY
MDFEALLRVMVDKGASDLFITAGVAPSIKVNGRIVPVTKSPLTPEQTREMVFAVMTEKQRREFTETQECNFAISARGIGR
FRVSAMHQRNLAAMVLRRIEVNIPQMDELRLPEVLKQLAMTKRGLVIFVGATGAGKSTSLAAMLGHRNRHSRGHIISIED
PIEFIHQHEGCIVTQREVGIDTDSFEIGLKNALRQAPDVIMIGEVRSTETMNYAIAFAETGHLCLATMHANNANQALDRI
MHFFPSEKQRQLWMDLSLNLRAIVAQQLIPTPDGKSRRAVVEVLLNTPLVSDLIRKGEVHALKDLMAKSNDVGMQTFDQA
LFELYSAGEITYEDALAHADSANDLRLMIKLDQEADSEHLQGRAAGLTIQSDDPY
Nucleotide
Download Length: 1128 bp
>NTDB_id=711700 NFC81_RS00370 WP_304995549.1 81610..82737(+) (pilU) [Salinispirillum sp. LH 10-3-1]
ATGGATTTCGAAGCCTTACTCCGCGTCATGGTCGATAAGGGTGCCTCCGACCTCTTTATTACCGCCGGTGTCGCGCCGAG
CATCAAAGTGAACGGCCGTATTGTGCCGGTTACCAAGTCGCCACTGACGCCGGAGCAAACCCGAGAAATGGTGTTTGCGG
TGATGACGGAAAAGCAACGACGAGAGTTCACTGAAACGCAAGAGTGTAACTTTGCCATCAGCGCACGCGGCATCGGCCGT
TTCCGCGTCAGTGCCATGCATCAGCGCAACCTGGCGGCTATGGTGTTGCGGCGCATCGAAGTGAACATCCCGCAAATGGA
TGAGCTGCGCTTGCCTGAAGTCCTGAAACAGCTGGCCATGACCAAACGTGGCTTGGTGATCTTTGTGGGTGCAACGGGGG
CGGGTAAATCGACTTCGCTGGCCGCCATGCTAGGACACCGCAATCGGCACTCGCGTGGCCACATCATCAGCATCGAAGAC
CCCATCGAATTTATCCATCAGCATGAGGGGTGTATTGTTACGCAGCGCGAAGTGGGGATCGACACCGACAGCTTTGAAAT
CGGCCTGAAGAACGCGCTGCGGCAGGCCCCGGACGTCATCATGATCGGTGAGGTGCGCTCCACCGAAACCATGAACTATG
CGATTGCCTTTGCCGAAACCGGTCACCTGTGTTTAGCCACCATGCACGCCAACAACGCCAACCAAGCGTTGGACCGTATC
ATGCACTTCTTCCCGTCGGAAAAGCAGCGTCAGTTGTGGATGGATTTGTCGTTGAACTTACGCGCTATCGTCGCGCAGCA
GCTGATCCCTACGCCGGACGGTAAAAGTCGGCGCGCCGTGGTCGAAGTCTTACTGAATACGCCGCTGGTGTCTGACCTTA
TTCGTAAAGGTGAAGTACATGCACTCAAAGATTTGATGGCAAAGAGTAATGATGTCGGGATGCAGACGTTTGATCAGGCA
TTGTTCGAGCTGTATTCGGCCGGTGAAATCACCTACGAAGATGCTCTGGCACACGCCGATTCGGCCAACGACTTACGTCT
GATGATCAAGCTGGATCAGGAAGCAGACTCCGAACACCTACAAGGGCGGGCCGCTGGACTGACAATTCAGAGTGATGACC
CCTATTGA
ATGGATTTCGAAGCCTTACTCCGCGTCATGGTCGATAAGGGTGCCTCCGACCTCTTTATTACCGCCGGTGTCGCGCCGAG
CATCAAAGTGAACGGCCGTATTGTGCCGGTTACCAAGTCGCCACTGACGCCGGAGCAAACCCGAGAAATGGTGTTTGCGG
TGATGACGGAAAAGCAACGACGAGAGTTCACTGAAACGCAAGAGTGTAACTTTGCCATCAGCGCACGCGGCATCGGCCGT
TTCCGCGTCAGTGCCATGCATCAGCGCAACCTGGCGGCTATGGTGTTGCGGCGCATCGAAGTGAACATCCCGCAAATGGA
TGAGCTGCGCTTGCCTGAAGTCCTGAAACAGCTGGCCATGACCAAACGTGGCTTGGTGATCTTTGTGGGTGCAACGGGGG
CGGGTAAATCGACTTCGCTGGCCGCCATGCTAGGACACCGCAATCGGCACTCGCGTGGCCACATCATCAGCATCGAAGAC
CCCATCGAATTTATCCATCAGCATGAGGGGTGTATTGTTACGCAGCGCGAAGTGGGGATCGACACCGACAGCTTTGAAAT
CGGCCTGAAGAACGCGCTGCGGCAGGCCCCGGACGTCATCATGATCGGTGAGGTGCGCTCCACCGAAACCATGAACTATG
CGATTGCCTTTGCCGAAACCGGTCACCTGTGTTTAGCCACCATGCACGCCAACAACGCCAACCAAGCGTTGGACCGTATC
ATGCACTTCTTCCCGTCGGAAAAGCAGCGTCAGTTGTGGATGGATTTGTCGTTGAACTTACGCGCTATCGTCGCGCAGCA
GCTGATCCCTACGCCGGACGGTAAAAGTCGGCGCGCCGTGGTCGAAGTCTTACTGAATACGCCGCTGGTGTCTGACCTTA
TTCGTAAAGGTGAAGTACATGCACTCAAAGATTTGATGGCAAAGAGTAATGATGTCGGGATGCAGACGTTTGATCAGGCA
TTGTTCGAGCTGTATTCGGCCGGTGAAATCACCTACGAAGATGCTCTGGCACACGCCGATTCGGCCAACGACTTACGTCT
GATGATCAAGCTGGATCAGGAAGCAGACTCCGAACACCTACAAGGGCGGGCCGCTGGACTGACAATTCAGAGTGATGACC
CCTATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
75.532 |
100 |
0.757 |
| pilU | Acinetobacter baylyi ADP1 |
64.986 |
95.2 |
0.619 |
| pilU | Vibrio cholerae strain A1552 |
56.286 |
93.333 |
0.525 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
41.888 |
90.4 |
0.379 |