Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NM620_RS14215 Genome accession   NZ_CP101694
Coordinates   3042830..3044362 (-) Length   510 a.a.
NCBI ID   WP_256383410.1    Uniprot ID   -
Organism   Photobacterium toruni strain WD2103     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3037830..3049362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM620_RS14185 - 3038496..3039155 (-) 660 WP_080176163.1 hemolysin III family protein -
  NM620_RS14190 - 3039310..3039987 (-) 678 WP_080176164.1 FadR/GntR family transcriptional regulator -
  NM620_RS14195 - 3040312..3040512 (+) 201 WP_256383408.1 hypothetical protein -
  NM620_RS14200 - 3040670..3040936 (+) 267 WP_080176166.1 YihD family protein -
  NM620_RS14205 - 3041103..3042089 (+) 987 WP_080176167.1 serine/threonine protein kinase -
  NM620_RS14210 - 3042167..3042769 (+) 603 WP_256383409.1 thiol:disulfide interchange protein DsbA/DsbL -
  NM620_RS14215 comM 3042830..3044362 (-) 1533 WP_256383410.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NM620_RS14220 ilvG 3044755..3046401 (+) 1647 WP_256383411.1 acetolactate synthase 2 catalytic subunit -
  NM620_RS14225 ilvM 3046404..3046658 (+) 255 WP_256383412.1 acetolactate synthase 2 small subunit -
  NM620_RS14230 - 3046673..3047605 (+) 933 WP_256383413.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55475.98 Da        Isoelectric Point: 9.0619

>NTDB_id=711591 NM620_RS14215 WP_256383410.1 3042830..3044362(-) (comM) [Photobacterium toruni strain WD2103]
MTLAIVHSRACVGVEAPPVTVEVHLSNGMPSFTLVGLPETTVKEAKDRVRSAIINAQFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPSDRLAQHEFIGELALSGDLRPVKGALPAALAALNAKRCLIVPDKNGDQVALVAEKQHKSAPCL
LAVCGFLCGQQQLQLHRQPRSKAPSTIINEQRDMQDIIGQQQGKRALEIAAAGSHNLLLLGPPGTGKTMLASRLRDLLPP
MTHQEAIETAAVASLTQQSLHHGNWLNRPFRTPHHSSSMAALVGGGSVPKPGEISLAHNGLLFLDEMPEFERKVLDSLRE
PLESGQIVISRATAKTTFPARFQLIGALNPSPTGYYEGNQSRTNPQAILRYLSRLSGPLLDRFDMSLEIPALPRGTLTTG
GDRGEPSSIIKARVDQARERMLARCGKVNALLSTRELDKHCELSFKDAEFLENALHQLGLSVRAYHRIIKVARTIADLAE
QDQIQRPHLAEALGYRAMDRLLKQLNCQVI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=711591 NM620_RS14215 WP_256383410.1 3042830..3044362(-) (comM) [Photobacterium toruni strain WD2103]
ATGACACTTGCTATTGTTCATAGTCGAGCTTGTGTGGGCGTGGAAGCCCCACCGGTAACAGTTGAGGTACATTTAAGTAA
TGGGATGCCAAGTTTCACGCTTGTTGGTTTGCCTGAAACAACAGTAAAAGAGGCTAAAGATCGTGTTCGAAGTGCAATTA
TCAATGCTCAATTTGAATTTCCATCGCGACGAATCACGGTCAATTTAGCCCCTGCTGATCTACCTAAAGAAGGTGGACGG
TTTGATTTGCCTATCGCTCTGGGTATTTTAGCGGCTTCTGGGCAGATTCCGTCGGATCGACTAGCACAGCATGAGTTTAT
AGGCGAACTGGCATTGTCAGGAGATTTACGCCCCGTTAAAGGTGCATTACCCGCAGCATTGGCGGCATTAAATGCTAAGC
GGTGTTTGATTGTGCCTGATAAAAATGGTGATCAAGTTGCGCTCGTGGCAGAAAAACAGCATAAATCAGCACCCTGTTTA
TTAGCAGTATGCGGGTTTTTATGTGGTCAACAACAGTTGCAATTACACCGTCAGCCGCGATCTAAAGCGCCATCGACAAT
AATTAATGAGCAGCGTGATATGCAAGATATTATTGGTCAACAACAAGGTAAGCGGGCTTTAGAAATTGCAGCGGCAGGCA
GTCATAATTTATTATTATTAGGTCCGCCGGGTACTGGAAAAACCATGTTAGCCTCTCGATTACGGGATCTGTTGCCACCA
ATGACCCATCAAGAAGCGATTGAAACAGCGGCGGTTGCTTCTTTGACTCAACAATCATTACATCATGGAAATTGGCTTAA
TCGTCCCTTTCGAACACCACATCACTCCAGTTCTATGGCTGCTTTAGTGGGGGGGGGCTCGGTGCCGAAACCGGGTGAAA
TTTCACTCGCACACAATGGACTGTTATTTTTAGATGAAATGCCTGAATTTGAACGCAAAGTGTTAGATTCTTTGCGTGAG
CCGTTAGAATCAGGGCAAATTGTCATTTCACGCGCTACTGCAAAAACGACTTTTCCAGCTCGTTTTCAATTAATCGGTGC
ATTAAACCCAAGTCCAACAGGTTATTACGAAGGCAATCAATCACGAACGAATCCCCAAGCTATTTTACGTTATTTAAGCC
GTTTATCAGGACCTTTGTTAGACCGCTTTGATATGTCTTTAGAGATCCCTGCGTTACCTCGTGGAACACTAACCACGGGA
GGTGATCGTGGTGAGCCAAGCTCAATAATTAAAGCGCGCGTCGATCAAGCACGTGAACGGATGTTAGCTCGTTGTGGCAA
AGTGAATGCATTACTTTCTACTCGAGAATTAGATAAACACTGTGAATTATCGTTTAAAGATGCTGAATTTTTAGAGAATG
CCTTACACCAACTAGGCTTGTCAGTGCGTGCCTATCACCGAATTATAAAGGTCGCGCGTACGATTGCTGATTTAGCTGAG
CAGGATCAGATTCAGCGCCCACATTTAGCTGAAGCATTAGGGTATCGAGCGATGGATCGGTTATTGAAGCAACTGAATTG
TCAGGTGATATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.078

100

0.761
  comM Vibrio cholerae strain A1552

75.342

100

0.755
  comM Glaesserella parasuis strain SC1401

64.822

99.216

0.643
  comM Haemophilus influenzae Rd KW20

63.708

99.412

0.633
  comM Legionella pneumophila str. Paris

50.8

98.039

0.498
  comM Legionella pneumophila strain ERS1305867

50.8

98.039

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.885

99.216

0.425