Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K6J67_RS08395 Genome accession   NZ_AP018776
Coordinates   1712751..1714280 (+) Length   509 a.a.
NCBI ID   WP_032824634.1    Uniprot ID   A0A0D0H0P9
Organism   Haemophilus influenzae strain CHBN-III-5 isolate 13H30     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1707751..1719280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J67_RS08370 (CHBNIII5_15960) oppC 1708097..1709032 (+) 936 WP_005661282.1 oligopeptide ABC transporter permease OppC -
  K6J67_RS08375 (CHBNIII5_15970) - 1709042..1710013 (+) 972 WP_005647625.1 ABC transporter ATP-binding protein -
  K6J67_RS08380 (CHBNIII5_15980) oppF 1710010..1711008 (+) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  K6J67_RS08385 (CHBNIII5_15990) - 1711048..1711914 (-) 867 WP_005670794.1 VirK/YbjX family protein -
  K6J67_RS08390 (CHBNIII5_16000) yihA 1712019..1712636 (+) 618 WP_005657287.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  K6J67_RS08395 (CHBNIII5_16010) comM 1712751..1714280 (+) 1530 WP_032824634.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K6J67_RS08400 (CHBNIII5_16020) deoC 1714314..1714985 (-) 672 WP_042601990.1 deoxyribose-phosphate aldolase -
  K6J67_RS08405 (CHBNIII5_16030) - 1715095..1715598 (+) 504 WP_050822891.1 protein disulfide oxidoreductase -
  K6J67_RS08410 (CHBNIII5_16040) rfaD 1715651..1716577 (+) 927 WP_050822892.1 ADP-glyceromanno-heptose 6-epimerase -
  K6J67_RS08415 (CHBNIII5_16050) xylB 1716628..1718109 (-) 1482 WP_042601986.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55890.40 Da        Isoelectric Point: 9.8668

>NTDB_id=71156 K6J67_RS08395 WP_032824634.1 1712751..1714280(+) (comM) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=71156 K6J67_RS08395 WP_032824634.1 1712751..1714280(+) (comM) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCACCGCTAGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACTGTAAATCTTGCACCTGCGGATTTACCGAAAGAAGGCGGAAGA
TTTGATTTGCCTATCGCCATCGGAATTTTAGCCGCATCAGATCAGCTTGATGCAAGCCGTTTAAAGCAATTTGAATTTGT
GGCAGAACTTGCGCTGACGGGCCAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCGCAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCTCAAACGCTT
TTAGATGTAGTGCAATTTCTCAATGGTCAGGAAAAATTACCACTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATCGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCAG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGAAAAACCATGTTAGCCAGCCGTTTGACAGGGCTTTTACCT
GAAATGACAGATCTAGAAGCGATAGAAACAGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGCGCCCCACATCATAGTGCATCAATGCCTGCTTTAGTGGGAGGTGGGACGATCCCAAAACCCGGTG
AAATATCCTTAGCAACAAATGGGGTACTTTTTCTTGATGAACTTCCAGAATTTGAGCGAAAAGTGTTAGATGCACTACGT
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTCGTGCTAATGCCAAAATTCAATTTCCAGCTCGTTTTCAATTAGTCGC
AGCGATGAATCCAAGCCCTACAGGCCATTATACTGGGACACATAACCGCACTTCACCCCAGCAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCCTTTTTAGATCGCTTTGACTTGTCTATTGAAGTGCCTTTATTGCCACAAGGCAGCTTACAAAAT
ACAGGTGATCGTGGCGAAACCAGCGCGCAAGTTCGTGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGAGCGGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTGGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0H0P9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.411

100

0.994
  comM Glaesserella parasuis strain SC1401

79.093

99.607

0.788
  comM Vibrio cholerae strain A1552

67.456

99.607

0.672
  comM Vibrio campbellii strain DS40M4

66.075

99.607

0.658
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475

Multiple sequence alignment