Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NNQ28_RS01810 Genome accession   NZ_CP101599
Coordinates   324061..325581 (-) Length   506 a.a.
NCBI ID   WP_316352078.1    Uniprot ID   -
Organism   Cronobacter dublinensis strain CFSA A137     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 319061..330581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNQ28_RS01800 (NNQ28_01820) hdfR 322704..323525 (-) 822 WP_275885535.1 HTH-type transcriptional regulator HdfR -
  NNQ28_RS01805 (NNQ28_01825) - 323645..323983 (+) 339 WP_007716988.1 DUF413 domain-containing protein -
  NNQ28_RS01810 (NNQ28_01830) comM 324061..325581 (-) 1521 WP_316352078.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NNQ28_RS01815 (NNQ28_01835) ilvL 325932..326030 (+) 99 WP_316352079.1 ilv operon leader peptide -
  NNQ28_RS01820 (NNQ28_01840) ilvG 326169..327815 (+) 1647 WP_316352080.1 acetolactate synthase 2 catalytic subunit -
  NNQ28_RS01825 (NNQ28_01845) ilvM 327812..328069 (+) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  NNQ28_RS01830 (NNQ28_01850) - 328090..329019 (+) 930 WP_316352081.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54969.24 Da        Isoelectric Point: 7.8874

>NTDB_id=710741 NNQ28_RS01810 WP_316352078.1 324061..325581(-) (comM) [Cronobacter dublinensis strain CFSA A137]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTLVGLPETTVKEARDRVRSALINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLHASHLGEYEFVGELALTGALRGVPGAISAAMEALGCKRKIIVAHDNAPEVGLINKEGCLVAHHL
QEVCAFLEGKTTLESAEPSVFHFKEPAGDLSEVIGQSQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLSQSAQAG
ESSSQVRERVIQSRDRQLARQGKLNAMLDNREIRQFCMLSAEDAQWLEAALLKLGLSVRAWQRLLKVARTIADSEQKERI
TREHLQEALGYRAIDRMLAHLQNLMS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=710741 NNQ28_RS01810 WP_316352078.1 324061..325581(-) (comM) [Cronobacter dublinensis strain CFSA A137]
ATGTCGCTGTCTGTTATTCATACCCGCGCCGCGCTGGGCGTAAAAGCGCCGCTCGTCACTGTCGAAGTGCATATCAGCGC
CGGGCTGCCAGGCCTGACATTGGTTGGACTGCCAGAAACGACGGTAAAGGAAGCCAGAGATCGTGTGCGCAGTGCGCTTA
TCAATAGTGGTTATGATTTCCCGGCCAAAAAAATCACTATAAATCTGGCGCCTGCTGATTTGCCAAAAGAAGGGGGACGA
TATGATTTGCCGATAGCGATAGCGCTCCTCGCGGCGTCTGAGCAATTGCATGCCTCACATCTTGGAGAGTATGAGTTTGT
GGGGGAACTGGCACTCACAGGCGCCCTGAGAGGCGTCCCCGGTGCGATTTCAGCGGCCATGGAAGCGCTTGGCTGTAAAA
GGAAGATAATTGTCGCGCACGACAACGCGCCGGAAGTGGGATTGATTAATAAAGAAGGGTGCCTTGTCGCCCATCATCTG
CAGGAGGTGTGTGCGTTTCTGGAGGGGAAAACGACGCTGGAATCAGCCGAACCCTCGGTGTTTCATTTTAAGGAGCCTGC
GGGCGATCTTAGCGAGGTTATCGGCCAGTCACAGGGGAAACGCGCGCTGGAATTAACGGCAGCTGGCGGCCATAACCTAT
TGTTTATCGGCCCTCCCGGTACAGGAAAAACGATGCTGGCCAGCAGACTCAACGGATTGTTGCCGCCTCTGAGCGACCAG
GAAGCACTGGAGAGCGCGGCAATACTTAGCCTCGTCAATCCCGTCTCTTTACATCACCAATGGCGTCAGCGGCCTTTCAG
GGCCCCTCACCATAGCGCATCGCTGAACGCAATGGTCGGCGGAGGTGCCATCCCTGCGCCCGGAGAAATTTCTCTCGCCC
ATAACGGCGTACTCTTCCTTGATGAACTGCCGGAATTTGAACGCCGTGTACTGGATGCATTGCGTGAGCCTATTGAATCC
GGACAGATCCATCTTTCACGAACCCGAGCCAAGCTTACTTATCCAGCACGCTTTCAGCTTATTGCTGCCATGAACCCCAG
CCCTACGGGGCACTATAAAGGGAACCATAACCGCTGCTCACCAGAACAGACGCTACGTTACCTGGGACGTCTTTCCGGGC
CTTTCCTCGACCGGTTTGATCTCTCGCTGGAAATACCGTTGCCGCCGCCAGGTATGCTCAGTCAGTCAGCGCAGGCGGGC
GAAAGCAGTTCGCAGGTCCGTGAGCGCGTCATTCAAAGCCGTGACAGGCAGCTTGCACGGCAAGGGAAGCTCAACGCGAT
GCTGGATAATCGGGAGATACGCCAGTTTTGTATGCTGAGCGCTGAAGATGCACAGTGGCTTGAAGCTGCACTACTCAAAC
TCGGTTTGTCTGTACGTGCCTGGCAGCGTTTACTGAAGGTGGCGCGAACTATCGCGGATAGCGAACAGAAAGAGAGGATT
ACTCGGGAACATTTGCAGGAAGCGCTAGGCTATCGCGCGATAGACAGGATGCTCGCGCATTTGCAAAACCTGATGTCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.1

100

0.615
  comM Glaesserella parasuis strain SC1401

60.355

100

0.605
  comM Vibrio cholerae strain A1552

60.437

99.407

0.601
  comM Vibrio campbellii strain DS40M4

60.359

99.209

0.599
  comM Legionella pneumophila str. Paris

47.887

98.221

0.47
  comM Legionella pneumophila strain ERS1305867

47.887

98.221

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.874

100

0.439