Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NNQ27_RS01500 Genome accession   NZ_CP101595
Coordinates   276380..277900 (-) Length   506 a.a.
NCBI ID   WP_275885536.1    Uniprot ID   -
Organism   Cronobacter dublinensis strain CFSA A84     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 271380..282900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNQ27_RS01490 (NNQ27_01510) hdfR 275023..275844 (-) 822 WP_275885535.1 HTH-type transcriptional regulator HdfR -
  NNQ27_RS01495 (NNQ27_01515) - 275964..276302 (+) 339 WP_007716988.1 DUF413 domain-containing protein -
  NNQ27_RS01500 (NNQ27_01520) comM 276380..277900 (-) 1521 WP_275885536.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NNQ27_RS01505 (NNQ27_01525) ilvL 278251..278349 (+) 99 WP_071601137.1 ilv operon leader peptide -
  NNQ27_RS01510 (NNQ27_01530) ilvG 278488..280134 (+) 1647 WP_275885537.1 acetolactate synthase 2 catalytic subunit -
  NNQ27_RS01515 (NNQ27_01535) ilvM 280131..280388 (+) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  NNQ27_RS01520 (NNQ27_01540) - 280409..281338 (+) 930 WP_007716995.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55028.39 Da        Isoelectric Point: 8.3777

>NTDB_id=710720 NNQ27_RS01500 WP_275885536.1 276380..277900(-) (comM) [Cronobacter dublinensis strain CFSA A84]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTLVGLPETTVKEARDRVRSALINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLHVSRLEEYEFVGELALTGALRGVPGAISAAMEALGCKRKIIVAHDNAPEVGLINKEGCLVAHHL
QEVCAFLEGKTTLESAEPSAFHFKEPAGDLSEVIGQSQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLSQSAPAG
ESSSQVRKRVIQSRDRQLARQGKLNAMLDNREIRQFCMLSAEDAQWLEAALLKLGLSVRAWQRLLKVARTIADSEQKERI
TREHLQEALGYRAIDRMLAHLQNLMS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=710720 NNQ27_RS01500 WP_275885536.1 276380..277900(-) (comM) [Cronobacter dublinensis strain CFSA A84]
ATGTCACTGTCCGTTATTCATACCCGCGCCGCGCTGGGCGTAAAAGCGCCGCTCGTCACTGTCGAAGTGCATATCAGCGC
CGGGCTGCCAGGCCTGACATTGGTTGGACTGCCAGAAACGACGGTAAAGGAAGCCAGAGATCGTGTGCGCAGTGCGCTTA
TCAATAGTGGTTATGATTTCCCGGCAAAAAAAATCACTATAAATCTCGCGCCTGCCGATTTGCCTAAGGAAGGGGGACGA
TATGATTTGCCGATAGCGATAGCGCTCCTCGCGGCGTCTGAGCAATTGCATGTTTCACGTCTTGAAGAGTATGAGTTTGT
GGGGGAACTGGCACTCACAGGCGCGCTGAGAGGCGTCCCCGGTGCGATTTCAGCGGCCATGGAAGCGCTTGGCTGTAAAA
GGAAGATAATTGTCGCGCACGACAACGCGCCGGAAGTGGGATTGATTAATAAAGAAGGCTGCCTTGTCGCCCATCATCTG
CAAGAGGTGTGCGCCTTTCTGGAAGGGAAAACGACGCTGGAATCAGCCGAACCCTCGGCGTTTCATTTTAAGGAGCCTGC
GGGCGATCTTAGCGAGGTTATCGGCCAGTCACAGGGGAAACGCGCGCTGGAATTAACGGCAGCTGGCGGCCATAACCTAT
TGTTTATCGGCCCTCCCGGTACAGGAAAAACGATGCTGGCCAGCAGACTCAACGGATTGTTGCCGCCTCTGAGCGACCAG
GAAGCACTGGAGAGCGCGGCGATACTTAGCCTCGTCAATCCCGTCTCTTTACATCACCAATGGCGTCAGCGGCCTTTCAG
GGCCCCTCACCATAGCGCATCGCTGAACGCAATGGTCGGCGGAGGTGCCATCCCTGCGCCCGGAGAAATTTCTCTTGCCC
ATAACGGCGTACTCTTCCTTGATGAACTTCCGGAATTTGAACGCCGTGTACTGGATGCATTGCGTGAGCCTATTGAATCC
GGACAGATCCATCTTTCACGAACCCGAGCCAAACTTACTTATCCAGCGCGCTTTCAGCTTATTGCTGCGATGAACCCCAG
CCCTACGGGGCACTATAAAGGGAACCATAACCGCTGCTCACCAGAACAGACGCTACGTTACCTGGGACGTCTTTCCGGGC
CTTTCCTCGACCGGTTTGATCTCTCGCTGGAAATACCGTTGCCGCCGCCAGGTATGCTCAGTCAGTCAGCGCCGGCGGGC
GAAAGCAGTTCGCAGGTCCGTAAGCGCGTCATTCAAAGCCGTGACAGACAGCTTGCACGGCAAGGGAAGCTCAACGCGAT
GCTGGATAATCGGGAGATACGCCAGTTTTGTATGCTGAGCGCTGAAGATGCACAGTGGCTTGAAGCGGCACTACTCAAAC
TCGGTTTGTCGGTACGTGCCTGGCAGCGTTTACTGAAGGTGGCGCGAACTATCGCGGATAGCGAACAGAAAGAGAGGATT
ACTCGGGAACATTTGCAGGAAGCGCTAGGCTATCGCGCGATAGACAGGATGCTCGCGCATTTGCAAAACCTGATGTCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.707

100

0.611
  comM Glaesserella parasuis strain SC1401

60.355

100

0.605
  comM Vibrio cholerae strain A1552

60.437

99.407

0.601
  comM Vibrio campbellii strain DS40M4

60.159

99.209

0.597
  comM Legionella pneumophila str. Paris

47.686

98.221

0.468
  comM Legionella pneumophila strain ERS1305867

47.686

98.221

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.936

99.407

0.437