Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMY27_RS01530 Genome accession   NZ_CP101591
Coordinates   292831..294351 (-) Length   506 a.a.
NCBI ID   WP_275876414.1    Uniprot ID   -
Organism   Cronobacter dublinensis strain CFSA A14     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 287831..299351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMY27_RS01520 (NMY27_01520) hdfR 291474..292295 (-) 822 WP_275876413.1 HTH-type transcriptional regulator HdfR -
  NMY27_RS01525 (NMY27_01525) - 292415..292753 (+) 339 WP_007716988.1 DUF413 domain-containing protein -
  NMY27_RS01530 (NMY27_01530) comM 292831..294351 (-) 1521 WP_275876414.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMY27_RS01535 (NMY27_01535) ilvL 294702..294800 (+) 99 WP_071601137.1 ilv operon leader peptide -
  NMY27_RS01540 (NMY27_01540) ilvG 294939..296585 (+) 1647 WP_275876415.1 acetolactate synthase 2 catalytic subunit -
  NMY27_RS01545 (NMY27_01545) ilvM 296582..296839 (+) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  NMY27_RS01550 (NMY27_01550) - 296860..297789 (+) 930 WP_275876416.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55129.45 Da        Isoelectric Point: 7.8777

>NTDB_id=710700 NMY27_RS01530 WP_275876414.1 292831..294351(-) (comM) [Cronobacter dublinensis strain CFSA A14]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTLVGLPETTVKEARDRVRSALINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLHVSRLEEYEFVGELALTGALRGVPGAISAAMEALGCKRKIIVAHDNAPEVGLINKEGCLVAHHL
QEVCAFLEGKTTLESAEPSLFHFKEPAGDLSEVIGQSQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLSQSAQAG
ENSSQVRERVIQSRDRQLARQGKLNAMLDNREIRQFCMLSAEDAQWLEAALLKLGLSVRAWQRLLKVARTIADSEQKERI
TREHLQEALGYRAIDRMLAHLQNLMS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=710700 NMY27_RS01530 WP_275876414.1 292831..294351(-) (comM) [Cronobacter dublinensis strain CFSA A14]
ATGTCGCTGTCCGTTATTCATACCCGCGCCGCGCTAGGCGTAAAAGCGCCGCTCGTCACTGTCGAAGTGCATATCAGCGC
CGGGCTGCCAGGCCTGACATTGGTTGGACTGCCAGAAACGACGGTAAAGGAAGCCAGAGATCGTGTGCGCAGTGCGCTTA
TCAATAGTGGTTATGATTTCCCGGCAAAAAAAATCACTATAAATCTCGCACCTGCCGATTTGCCTAAGGAAGGGGGACGA
TATGATTTGCCGATAGCGATAGCGCTCCTCGCGGCGTCTGAGCAATTGCATGTTTCACGTCTTGAAGAGTATGAGTTTGT
GGGGGAACTGGCACTCACAGGCGCGCTGAGAGGCGTCCCCGGTGCGATTTCAGCGGCCATGGAAGCGCTTGGCTGTAAAA
GGAAGATAATTGTCGCGCACGACAACGCGCCGGAAGTGGGATTGATTAATAAAGAAGGCTGCCTTGTCGCCCATCATCTG
CAGGAGGTGTGTGCGTTTCTGGAGGGGAAAACGACGCTGGAATCAGCCGAACCCTCGTTGTTTCATTTTAAGGAGCCTGC
GGGCGATCTTAGTGAGGTTATCGGCCAGTCACAGGGGAAACGCGCGCTGGAATTAACGGCAGCTGGTGGCCATAACCTAT
TGTTTATCGGCCCTCCCGGTACAGGAAAAACGATGCTGGCCAGCAGACTCAACGGATTGTTGCCGCCTCTGAGCGACCAG
GAAGCACTGGAGAGCGCGGCAATACTTAGCCTCGTCAATCCCGTCTCTTTACATCACCAATGGCGTCAGCGGCCTTTCAG
GGCCCCTCACCATAGCGCATCGCTGAACGCAATGGTCGGCGGAGGTGCCATCCCTGCGCCCGGAGAAATTTCTCTCGCCC
ATAACGGCGTACTCTTCCTTGATGAACTGCCGGAATTTGAACGCCGCGTACTGGATGCATTACGTGAGCCTATTGAATCC
GGACAGATCCATCTTTCACGAACCCGAGCCAAGCTTACTTATCCAGCGCGCTTTCAGCTTATTGCTGCCATGAACCCCAG
CCCTACGGGGCACTATAAAGGGAACCATAACCGCTGCTCACCAGAACAGACGCTACGTTACCTGGGACGTCTTTCCGGGC
CTTTCCTCGACCGGTTTGATCTCTCGCTGGAAATTCCGTTGCCGCCGCCAGGTATGCTCAGTCAGTCAGCGCAGGCGGGC
GAAAACAGTTCGCAGGTCCGTGAGCGCGTCATTCAAAGCCGTGACAGACAGCTTGCACGGCAAGGGAAACTCAACGCGAT
GCTGGATAATCGGGAGATACGCCAGTTTTGTATGCTGAGCGCTGAAGATGCACAGTGGCTTGAAGCGGCACTGCTCAAAC
TCGGGTTGTCGGTACGTGCCTGGCAGCGTTTACTGAAGGTGGCGCGAACTATCGCGGATAGCGAACAGAAAGAGAGGATT
ACTCGGGAACATTTGCAGGAAGCGCTAGGCTATCGCGCGATAGACAGGATGCTCGCGCATTTGCAAAACCTGATGTCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.707

100

0.611
  comM Glaesserella parasuis strain SC1401

60.355

100

0.605
  comM Vibrio campbellii strain DS40M4

60.359

99.209

0.599
  comM Vibrio cholerae strain A1552

60.239

99.407

0.599
  comM Legionella pneumophila str. Paris

48.096

98.617

0.474
  comM Legionella pneumophila strain ERS1305867

48.096

98.617

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.444

100

0.439