Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NNL22_RS01345 Genome accession   NZ_CP101527
Coordinates   286438..287946 (+) Length   502 a.a.
NCBI ID   WP_251810876.1    Uniprot ID   A0A9E8KPD2
Organism   Alkalimarinus sediminis strain FA028     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 281438..292946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNL22_RS01320 (NNL22_01315) speE 282303..283169 (+) 867 WP_377930532.1 polyamine aminopropyltransferase -
  NNL22_RS01325 (NNL22_01320) - 283438..283629 (+) 192 WP_251810880.1 DUF6316 family protein -
  NNL22_RS01330 (NNL22_01325) - 283845..285110 (-) 1266 WP_251810879.1 ammonium transporter -
  NNL22_RS01335 (NNL22_01330) glnK 285174..285512 (-) 339 WP_250656391.1 P-II family nitrogen regulator -
  NNL22_RS01340 (NNL22_01335) - 285913..286272 (+) 360 WP_251810877.1 accessory factor UbiK family protein -
  NNL22_RS01345 (NNL22_01340) comM 286438..287946 (+) 1509 WP_251810876.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NNL22_RS01350 (NNL22_01345) - 288238..289035 (-) 798 WP_251810875.1 ABC transporter ATP-binding protein -
  NNL22_RS01355 (NNL22_01350) - 289135..290157 (-) 1023 WP_251810872.1 ABC transporter permease -
  NNL22_RS01360 (NNL22_01355) - 290290..291672 (-) 1383 WP_251810871.1 CmpA/NrtA family ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54394.34 Da        Isoelectric Point: 7.5251

>NTDB_id=710389 NNL22_RS01345 WP_251810876.1 286438..287946(+) (comM) [Alkalimarinus sediminis strain FA028]
MSLSIIYSRARVGVSSPLVTVETHISNGLPSLSIVGLPETAVKESKDRVRSALINSGFEFPNRRITINLAPADLPKEGGR
YDLAIALGILTASHQLPAEPFSSREFIGELALTGDVRSVKGCLPAAMACGKEGRTLYIPSQNSEEASLCRSTRMLAADHL
LQVCSDIKGDALLPELTLDEHPRERLTVPDLLDVKGQFLARRALEIAAAASLNLLFYGPPGTGKSMLASRLPGILPGLSE
SEALEVAAIHSISGQPVDIAHWGRRPFRTPHHTASAVALVGGGSSPKPGEISLAHNGVLFLDELPEYSRKVLEVLREPLE
SGHIAISRAASQITFPARFQLVAAMNPCPCGYHGHPNIECTDTPQQIAKYRQKLSGPLLDRFDMHVEVPAQAADVLIAKS
LNTESSDIVRDRVLAAREIQFQRSGKANRELSGGELEEVCKLNDQSRALLENAMNRLGLSARAFHRVLRVARTIADLQQV
ESVSMQHITEALGYRKLDRKAT

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=710389 NNL22_RS01345 WP_251810876.1 286438..287946(+) (comM) [Alkalimarinus sediminis strain FA028]
ATGTCTCTTTCGATTATCTATAGCCGTGCCCGCGTGGGCGTCAGTTCGCCGTTAGTCACGGTAGAAACTCATATCTCTAA
TGGCCTGCCTAGTTTGTCTATTGTGGGTCTCCCTGAAACCGCAGTTAAAGAGAGCAAAGATCGAGTTAGAAGTGCGCTTA
TTAACTCTGGTTTTGAGTTCCCTAACCGACGCATCACAATCAACTTAGCCCCAGCTGATCTACCTAAAGAGGGTGGTCGA
TACGATTTGGCGATTGCATTAGGCATATTAACGGCTTCACATCAGCTACCTGCCGAGCCTTTTTCCAGCCGTGAGTTTAT
TGGAGAGCTAGCCCTAACGGGTGATGTTCGTTCAGTAAAGGGCTGCCTTCCCGCAGCCATGGCGTGTGGCAAAGAGGGTC
GAACATTGTACATCCCCTCACAGAATAGCGAAGAAGCATCGTTATGTCGGTCAACACGAATGCTTGCAGCAGATCACCTT
TTACAAGTTTGCTCAGATATTAAAGGTGATGCACTTCTGCCTGAATTAACCCTGGATGAACATCCCCGTGAACGTCTGAC
TGTGCCCGATCTACTGGATGTTAAAGGTCAGTTTCTAGCACGTCGCGCACTGGAGATTGCTGCAGCGGCGAGTCTTAATC
TGTTGTTTTATGGTCCACCGGGTACGGGAAAAAGTATGTTGGCCTCTCGTTTGCCGGGTATATTGCCCGGTTTATCAGAG
AGTGAAGCTCTTGAAGTGGCGGCCATTCACTCTATTAGTGGTCAGCCGGTTGATATTGCCCATTGGGGGCGTCGCCCCTT
TAGAACGCCCCATCATACGGCCTCTGCAGTTGCCTTGGTGGGAGGAGGGAGCTCACCCAAACCGGGCGAAATATCTCTGG
CCCACAATGGTGTACTTTTTCTAGATGAGCTGCCGGAGTACAGTCGTAAAGTGTTAGAGGTATTACGCGAGCCGTTAGAG
AGCGGTCATATTGCGATCTCTCGTGCTGCATCGCAGATTACCTTTCCTGCGCGCTTTCAATTAGTGGCTGCTATGAACCC
ATGCCCCTGTGGGTACCACGGTCACCCTAATATCGAATGCACAGACACACCGCAGCAGATTGCCAAGTATCGACAAAAAC
TATCGGGCCCTTTGTTGGATCGTTTTGATATGCATGTTGAGGTGCCCGCTCAGGCAGCAGACGTACTAATTGCCAAATCG
CTCAATACAGAAAGCAGCGATATAGTACGAGACCGGGTTTTGGCCGCTCGTGAAATTCAATTTCAGCGCTCAGGTAAGGC
TAATAGAGAGTTATCAGGTGGAGAGCTTGAAGAGGTCTGTAAATTAAACGACCAGTCTCGGGCGTTATTAGAAAACGCTA
TGAATCGGTTGGGGCTTTCGGCAAGAGCCTTTCATCGTGTACTTAGGGTTGCTAGAACAATAGCAGATCTTCAACAGGTG
GAATCGGTATCAATGCAGCATATTACTGAAGCGTTGGGTTATCGAAAGCTCGATCGCAAGGCTACCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.635

100

0.552
  comM Vibrio cholerae strain A1552

55.311

99.402

0.55
  comM Glaesserella parasuis strain SC1401

53.968

100

0.542
  comM Vibrio campbellii strain DS40M4

53.785

100

0.538
  comM Legionella pneumophila str. Paris

50.497

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.497

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.139

100

0.464