Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NKW85_RS12425 Genome accession   NZ_CP101498
Coordinates   2602033..2602551 (-) Length   172 a.a.
NCBI ID   WP_002480323.1    Uniprot ID   -
Organism   Staphylococcus simulans strain QB7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2597033..2607551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKW85_RS12395 (NKW85_12385) - 2597147..2597770 (+) 624 WP_002480329.1 NDxxF motif lipoprotein -
  NKW85_RS12400 (NKW85_12390) - 2597836..2598276 (-) 441 WP_023014894.1 carboxymuconolactone decarboxylase family protein -
  NKW85_RS12405 (NKW85_12395) - 2598435..2599601 (+) 1167 WP_023014893.1 ArgE/DapE family deacylase -
  NKW85_RS12410 (NKW85_12400) - 2599658..2600245 (-) 588 WP_023014892.1 histidine phosphatase family protein -
  NKW85_RS12415 (NKW85_12405) - 2600582..2601193 (-) 612 WP_002480325.1 hypothetical protein -
  NKW85_RS12420 (NKW85_12410) rpsR 2601737..2601979 (-) 243 WP_002480324.1 30S ribosomal protein S18 -
  NKW85_RS12425 (NKW85_12415) ssbA 2602033..2602551 (-) 519 WP_002480323.1 single-stranded DNA-binding protein Machinery gene
  NKW85_RS12430 (NKW85_12420) rpsF 2602573..2602869 (-) 297 WP_002480322.1 30S ribosomal protein S6 -
  NKW85_RS12435 (NKW85_12425) - 2603031..2604014 (-) 984 WP_023014891.1 thermonuclease family protein -
  NKW85_RS12440 (NKW85_12430) - 2604168..2604425 (+) 258 WP_023014890.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  NKW85_RS12445 (NKW85_12435) - 2604419..2604757 (+) 339 WP_023014889.1 type II toxin-antitoxin system PemK/MazF family toxin -
  NKW85_RS12450 (NKW85_12440) argF 2605035..2606039 (+) 1005 WP_023014888.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19044.65 Da        Isoelectric Point: 5.1953

>NTDB_id=710255 NKW85_RS12425 WP_002480323.1 2602033..2602551(-) (ssbA) [Staphylococcus simulans strain QB7]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHGQQSGGNNQFQSYGQNYGGQQQGQNTSSYQNNNSSNAGQSDNPFANTN
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=710255 NKW85_RS12425 WP_002480323.1 2602033..2602551(-) (ssbA) [Staphylococcus simulans strain QB7]
ATGATTAACAGAGTTGTATTAGTAGGCCGTTTAACTAAGGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCGGACTTTATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAAAACGTAAGCAATTACTTGTTTAAAGGAAGTCTTGCAGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGACGCCGTATCTTTGTTACTGAAGTTGTATGTGACAGTGTTCAATTCCTTGAACCAAAATC
ACAAAACCAACGTCATGGCCAACAATCTGGCGGTAATAACCAATTCCAGAGCTATGGTCAAAACTATGGTGGTCAACAAC
AAGGACAAAATACGTCATCTTATCAAAACAACAATTCATCCAACGCTGGTCAATCAGACAATCCATTCGCAAATACGAAC
GGACCTATTGACATCAGTGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.221

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.576
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

63.953

0.372
  ssb Vibrio cholerae strain A1552

34.831

100

0.36