Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K6J58_RS08315 Genome accession   NZ_AP018772
Coordinates   1709866..1711395 (+) Length   509 a.a.
NCBI ID   WP_005686417.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-1 isolate 15H02     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1704866..1716395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J58_RS08290 (CHBNIII1_15800) oppC 1705212..1706147 (+) 936 WP_005661282.1 oligopeptide ABC transporter permease OppC -
  K6J58_RS08295 (CHBNIII1_15810) - 1706157..1707128 (+) 972 WP_005657280.1 ABC transporter ATP-binding protein -
  K6J58_RS08300 (CHBNIII1_15820) oppF 1707125..1708123 (+) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  K6J58_RS08305 (CHBNIII1_15830) - 1708163..1709029 (-) 867 WP_005686419.1 VirK/YbjX family protein -
  K6J58_RS08310 (CHBNIII1_15840) yihA 1709134..1709751 (+) 618 WP_005657287.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  K6J58_RS08315 (CHBNIII1_15850) comM 1709866..1711395 (+) 1530 WP_005686417.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K6J58_RS08320 (CHBNIII1_15860) deoC 1711428..1712099 (-) 672 WP_005686415.1 deoxyribose-phosphate aldolase -
  K6J58_RS08325 (CHBNIII1_15870) - 1712210..1712713 (+) 504 WP_005686413.1 protein disulfide oxidoreductase -
  K6J58_RS08330 (CHBNIII1_15880) rfaD 1712766..1713692 (+) 927 WP_044345822.1 ADP-glyceromanno-heptose 6-epimerase -
  K6J58_RS08335 (CHBNIII1_15890) xylB 1713743..1715224 (-) 1482 WP_005686409.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55921.41 Da        Isoelectric Point: 9.8668

>NTDB_id=71015 K6J58_RS08315 WP_005686417.1 1709866..1711395(+) (comM) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQQHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=71015 K6J58_RS08315 WP_005686417.1 1709866..1711395(+) (comM) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCACCGCTAGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTAAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACAGTGAATCTCGCCCCTGCGGATTTACCGAAAGAAGGTGGGCGA
TTTGATTTGCCTATTGCTATCGGAATTTTAGCTGCATCGGATCAGCTTGATGCAAGCCGTTTAAAGCAATTTGAATTTGT
GGCTGAACTTGCGCTGACGGGACAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCACAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCTCAAACGCTT
TTGGATGTAGTGCAATTTCTCAACGGTCAGGAAAAATTACCACTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATTGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCGG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGGAAAACCATGTTAGCCAGCCGATTGACAGGGCTTTTACCT
GAAATGACAGATTTAGAAGCGATAGAAACGGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGCGCACCGCACCATAGTGCATCAATGCCAGCTTTAGTTGGTGGTGGGACGATCCCTAAACCTGGCG
AAATATCCTTAGCAACAAATGGGGTACTTTTTCTTGATGAACTTCCAGAATTTGAGCGAAAAGTGTTAGATGCACTACGC
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTAGAGCCAATGCCAAAATTCAATTTCCGGCTCGTTTTCAATTAGTGGC
AGCGATGAATCCAAGCCCGACAGGCCATTATACTGGGACACATAACCGCACTTCACCGCAACAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCATTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTACTGCCACAAGGTAGCTTGCAAAAT
ACAGGCGATCGTGGCGAAACCAGCGCGCAAGTTCGTGAAAAAGTGTTAAAAGTACGTGAGATTCAAATGGAAAGAGCAGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTGGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACAGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGTTGCAGAAATTATC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.214

100

0.992
  comM Glaesserella parasuis strain SC1401

78.895

99.607

0.786
  comM Vibrio cholerae strain A1552

67.258

99.607

0.67
  comM Vibrio campbellii strain DS40M4

66.075

99.607

0.658
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475

Multiple sequence alignment