Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMB96_RS08180 Genome accession   NZ_CP101417
Coordinates   1951507..1953027 (-) Length   506 a.a.
NCBI ID   WP_023905488.1    Uniprot ID   A0A6V7FK75
Organism   Xanthomonas hortorum strain jj2001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1946507..1958027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB96_RS08160 (NMB96_08145) - 1946838..1947962 (+) 1125 WP_023905493.1 acyl-CoA desaturase -
  NMB96_RS08165 (NMB96_08150) - 1948214..1949776 (-) 1563 WP_183086918.1 EAL domain-containing protein -
  NMB96_RS08170 (NMB96_08155) - 1950161..1950337 (+) 177 WP_023905490.1 hypothetical protein -
  NMB96_RS08175 (NMB96_08160) - 1950908..1951417 (-) 510 WP_043889908.1 lipocalin family protein -
  NMB96_RS08180 (NMB96_08165) comM 1951507..1953027 (-) 1521 WP_023905488.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMB96_RS08185 (NMB96_08170) - 1953044..1953322 (-) 279 WP_023905487.1 accessory factor UbiK family protein -
  NMB96_RS08190 (NMB96_08175) - 1953475..1953849 (+) 375 WP_303623041.1 P-II family nitrogen regulator -
  NMB96_RS08195 (NMB96_08180) - 1954274..1956247 (+) 1974 WP_255086645.1 beta-N-acetylglucosaminidase domain-containing protein -
  NMB96_RS08200 (NMB96_08185) - 1956588..1957271 (-) 684 WP_023905483.1 RIO1 family regulatory kinase/ATPase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53816.57 Da        Isoelectric Point: 8.3450

>NTDB_id=710091 NMB96_RS08180 WP_023905488.1 1951507..1953027(-) (comM) [Xanthomonas hortorum strain jj2001]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALAEYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGTQKAPAAELAVQALGARSLPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLVRWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDSSGRCRCSGDTIGRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
VGEDSASVRTRVVAARARQLARAGVPNAQLDQAQTDHHCRLRNDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDSA
VIATHHLTEAIGYRKLDRAVGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=710091 NMB96_RS08180 WP_023905488.1 1951507..1953027(-) (comM) [Xanthomonas hortorum strain jj2001]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCGCGCGAACGCGTGCGTGCCGCGCTGC
TATGCGCACAGTTCGAATTCCCCGCGCGGCGCATCACCATCAATCTGGCGCCGGCCGATTTACCCAAGGAAGGCGGCCGT
TTCGATCTGCCGATCGCACTCGGCATCCTGGCCGCCAGCGGGCAGATCGACCGGCAGGCCTTGGCCGAGTACGAATTTCT
CGGCGAACTCGCCCTGACCGGCGAGTTGCGCGGTGTCGATGGCGTGCTGCCCGCCGCCCTGGCAGCGGCGCAGGCCGGCC
GCCGCCTGATCGTGCCGCTGGCCAACGGTGCAGAGGCCGCCATCGCCGGCCACGTCGAAGCCTTCACCGCGCGCACGCTG
CTGGAAGTCTGTGCCACGCTCAATGGCACCCAAAAGGCGCCCGCCGCCGAACTGGCGGTGCAGGCGCTCGGCGCGCGCTC
TCTGCCCGACATGGCCGACGTGCGCGGCCAACCGCATGCTCGCCGCGCGCTGGAAATTGCTGCAGCCGGCGGTCACCATT
TATTGCTGGTCGGTAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCCTGCCCGGCCTGCTGCCGGAAGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATTACCTCCATCAGCGGTCGCGGACTGGATCTTGTGCGCTGGCGGCAACGCCCCTA
TCGGGCTCCGCACCACACCGCCAGCGCGGTCGCCTTGGTTGGCGGCGGCACACATCCACGCCCCGGCGAGATCTCGCTGG
CCCACAACGGCGTGCTGTTTCTGGACGAGTTGCCCGAGTGGCAACGCCAAACGCTGGAAGTGCTGCGCGAGCCGCTGGAA
TCGGGCCTGGTCACCATCTCGCGCGCCGCGCGCAGTGTGGATTTCCCGGCAAGATTTCAACTGGTCGCTGCGATGAATCC
GTGTCCGTGCGGGTGGGCAGGCGATAGCAGTGGGCGTTGCCGTTGCAGCGGCGACACCATCGGCCGTTATCGCAGCCGGA
TCTCCGGGCCGCTGCTGGACCGGATCGATCTGCATGTGGAGGTCCCGCGCCTGCCGCCGCAGGCCCTGCGCAGCGGCAAC
GTCGGCGAGGACAGTGCCAGCGTGCGCACCCGCGTGGTCGCGGCGCGCGCGCGGCAACTTGCACGTGCCGGCGTGCCCAA
TGCACAACTGGACCAAGCGCAAACCGATCATCACTGCCGCCTGCGCAACGACGATCAGTTGCTGCTGGAACGCGCGATCG
AACACCTGCAGCTTTCCGCACGTTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GTCATTGCCACGCACCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGCGCGGTGGGCACGGCAAGCGCAGCCTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7FK75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

55.842

99.802

0.557
  comM Glaesserella parasuis strain SC1401

54.851

99.802

0.547
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Legionella pneumophila str. Paris

51.67

100

0.52
  comM Legionella pneumophila strain ERS1305867

51.67

100

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.26

100

0.464