Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NK667_RS28485 Genome accession   NZ_CP101125
Coordinates   6477293..6478786 (-) Length   497 a.a.
NCBI ID   WP_054617028.1    Uniprot ID   -
Organism   Pseudomonas nunensis strain In5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6472293..6483786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NK667_RS28465 (NK667_28465) - 6472337..6473257 (+) 921 WP_054617030.1 LysR substrate-binding domain-containing protein -
  NK667_RS28470 (NK667_28470) - 6473432..6475408 (+) 1977 WP_054048498.1 methyl-accepting chemotaxis protein -
  NK667_RS28475 (NK667_28475) - 6475673..6476887 (+) 1215 WP_054617029.1 aldose 1-epimerase family protein -
  NK667_RS28480 (NK667_28480) - 6476940..6477242 (-) 303 WP_054048502.1 hypothetical protein -
  NK667_RS28485 (NK667_28485) comM 6477293..6478786 (-) 1494 WP_054617028.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NK667_RS28490 (NK667_28490) - 6479162..6479332 (-) 171 WP_177331480.1 hypothetical protein -
  NK667_RS28495 (NK667_28495) - 6479582..6479860 (+) 279 WP_054617026.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NK667_RS28500 (NK667_28500) - 6479869..6480174 (+) 306 WP_054617025.1 HigA family addiction module antitoxin -
  NK667_RS28505 (NK667_28505) - 6480228..6480755 (-) 528 WP_054617024.1 BRO-N domain-containing protein -
  NK667_RS28510 (NK667_28510) - 6481199..6481459 (-) 261 WP_054048512.1 accessory factor UbiK family protein -
  NK667_RS28515 (NK667_28515) glnK 6481875..6482213 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  NK667_RS28520 (NK667_28520) - 6482249..6483586 (+) 1338 WP_054048514.1 ammonium transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53063.23 Da        Isoelectric Point: 7.8784

>NTDB_id=708910 NK667_RS28485 WP_054617028.1 6477293..6478786(-) (comM) [Pseudomonas nunensis strain In5]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRILVVPRENAEEACLASGLKVIAVDHL
LQAVAHFNGHTPIEPYVSNGLLYASMPYPDLNEVQGQMSAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
NEALEVAAIQSVSSCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPLPKP
GDDTTTAAALVADARERQHKRQGCANAFLDLPGLRRHCKLSTADESWLESACERLTLSLRAAHRLLKVARTLADLEQVDG
ITREHLAEALQYRPASA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=708910 NK667_RS28485 WP_054617028.1 6477293..6478786(-) (comM) [Pseudomonas nunensis strain In5]
ATGTCCCTCTCCATCGTCCATAGCCGCGCCCAGATTGGTGTAGATGCGCCCGCCGTTACCGTCGAAGTCCATCTGGCCAA
CGGTCTTCCCTCCCTGACCATGGTCGGTTTGCCGGAGGCTGCGGTGAAAGAAAGCAAGGACCGGGTACGCAGCGCGATCA
TCAATTCCGGCCTGCAATTTCCGGCGCGGCGCATCACGTTGAATCTCGCGCCTGCGGATTTGCCGAAGGACGGCGGGCGG
TTCGATCTGGCGATTGCATTGGGGATTTTGTCCGCCAGCGTGCAGGTGCCGACGTTGACCCTGGATGATGTGGAATGCCT
TGGCGAACTGGCGTTATCCGGCGCGGTCCGGGCCGTTCGCGGTGTACTCCCCGCAGCGCTGGCAGCACGCAAGGCCGGTC
GGATACTGGTGGTGCCGCGAGAGAATGCCGAGGAGGCGTGCCTGGCGTCAGGGTTGAAGGTGATTGCAGTGGATCATTTG
CTTCAGGCGGTCGCGCACTTCAACGGACACACACCTATCGAGCCTTACGTATCCAATGGCTTGCTGTACGCCAGCATGCC
TTATCCCGATTTGAATGAGGTGCAGGGCCAAATGTCAGCTAAGCGTGCGCTGCTGATTGCGGCAGCAGGCGCACACAATT
TGTTGTTCAGCGGACCACCGGGGACAGGGAAAACCCTGCTGGCGAGCCGATTGCCCGGGCTCTTGCCACCGCTGGCCGAG
AATGAGGCACTGGAAGTAGCGGCGATTCAATCGGTCTCCAGTTGCGTGCCGCTGAGCCACTGGCCACAACGACCGTTTCG
CCAACCCCACCACTCTGCATCCGGTCCGGCATTGGTGGGCGGTGGCTCAAAACCGCAACCCGGAGAAATCACCCTCGCCC
ACCACGGCGTGCTGTTCCTTGATGAACTACCGGAATTTGATCGAAAGGTCCTGGAAGTTTTGCGAGAGCCGATGGAATCC
GGCCACATTGTGATATCCCGCGCCAAGGACCGCGTGCGTTTCCCGGCACGCTTCCAACTGGTCGCCGCGATGAACCCGTG
CCCCTGTGGATATCTTGGCGAACCCAGCGGCAAATGCAGTTGTACACCGGACATGGTCCAGCGTTACCGCAACAAACTCT
CCGGGCCGCTGCTCGATCGCATCGACCTGCACCTGACCGTCGCCCGGGAAGCCACAGCGTTGAATCCTTTGCCCAAACCC
GGCGACGACACAACCACCGCCGCTGCACTGGTTGCCGACGCAAGGGAGCGGCAACACAAACGCCAAGGCTGCGCCAACGC
ATTCCTTGATCTGCCAGGACTGCGTCGGCACTGCAAGTTATCCACAGCCGATGAAAGCTGGCTCGAATCCGCCTGCGAAC
GGCTGACGCTGTCATTGCGAGCAGCCCATCGACTGCTGAAAGTTGCCCGTACCTTGGCGGATCTCGAGCAGGTCGACGGG
ATCACCCGCGAGCATCTGGCAGAGGCGTTGCAATATCGCCCTGCCTCAGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.728

100

0.547
  comM Vibrio campbellii strain DS40M4

54.141

99.598

0.539
  comM Haemophilus influenzae Rd KW20

53.094

100

0.535
  comM Glaesserella parasuis strain SC1401

52.906

100

0.531
  comM Legionella pneumophila str. Paris

49.398

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.398

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.8

100

0.451