Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K6J56_RS08380 Genome accession   NZ_AP018768
Coordinates   1701691..1703220 (+) Length   509 a.a.
NCBI ID   WP_044364399.1    Uniprot ID   A0AAJ8WDA4
Organism   Haemophilus influenzae strain CHBN-II-5 isolate 13H40     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1696691..1708220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J56_RS08355 (CHBNII5_15910) oppC 1697037..1697972 (+) 936 WP_005661282.1 oligopeptide ABC transporter permease OppC -
  K6J56_RS08360 (CHBNII5_15920) - 1697982..1698953 (+) 972 WP_005647625.1 ABC transporter ATP-binding protein -
  K6J56_RS08365 (CHBNII5_15930) oppF 1698950..1699948 (+) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  K6J56_RS08370 (CHBNII5_15940) - 1699988..1700854 (-) 867 WP_021034921.1 VirK/YbjX family protein -
  K6J56_RS08375 (CHBNII5_15950) yihA 1700959..1701576 (+) 618 WP_005690705.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  K6J56_RS08380 (CHBNII5_15960) comM 1701691..1703220 (+) 1530 WP_044364399.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K6J56_RS08385 (CHBNII5_15970) deoC 1703254..1703925 (-) 672 WP_005690707.1 deoxyribose-phosphate aldolase -
  K6J56_RS08390 (CHBNII5_15980) - 1704036..1704539 (+) 504 WP_005686413.1 protein disulfide oxidoreductase -
  K6J56_RS08395 (CHBNII5_15990) rfaD 1704592..1705518 (+) 927 WP_005690709.1 ADP-glyceromanno-heptose 6-epimerase -
  K6J56_RS08400 (CHBNII5_16000) xylB 1705569..1707050 (-) 1482 WP_032826718.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55890.40 Da        Isoelectric Point: 9.8668

>NTDB_id=70875 K6J56_RS08380 WP_044364399.1 1701691..1703220(+) (comM) [Haemophilus influenzae strain CHBN-II-5 isolate 13H40]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGALFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSVQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=70875 K6J56_RS08380 WP_044364399.1 1701691..1703220(+) (comM) [Haemophilus influenzae strain CHBN-II-5 isolate 13H40]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCACCGCTAGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACAGTGAATCTCGCCCCTGCGGATTTACCGAAAGAAGGCGGAAGA
TTTGATTTGCCTATTGCTATCGGGATTTTAGCTGCATCAGATCAGCTTGATGCAAGCCGTTTAAAGCAATTTGAATTTGT
GGCAGAGCTTGCGCTGACGGGCCAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCGCAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCTCAAACGCTT
TTAGATGTAGTGCAATTTCTCAATGGTCAGGAAAAATTACCCCTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATCGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCGG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGGAAAACCATGTTAGCCAGCCGTTTGACAGGGCTTTTACCT
GAAATGACAGATTTAGAAGCGATAGAAACAGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
GCAACGTCCTTTTCGCGCACCACACCATAGTGCATCAATGCCGGCTTTAGTTGGTGGCGGAACGATCCCTAAACCTGGCG
AAATATCCTTAGCAACAAATGGGGCGCTTTTTCTTGATGAACTTCCAGAATTTGAGCGAAAAGTGTTAGATGCACTACGC
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTCGTGCCAATGCAAAAATTCAATTCCCAGCTCGTTTTCAATTAGTGGC
AGCGATGAATCCAAGCCCTACAGGCCATTATACTGGGACACATAACCGCACTTCACCACAGCAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCATTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTACTGCCACAAGGTAGCTTGCAAAAT
ACGGGCGATCGTGGCGAAACCAGCGTGCAAGTTCGTGAAAAAGTGTTAAAAGTACGTGAGATTCAAATGGAAAGAGCGGG
GAAAATCAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTTGGGCTTTCTGTACGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.018

100

0.99
  comM Glaesserella parasuis strain SC1401

78.895

99.607

0.786
  comM Vibrio cholerae strain A1552

67.258

99.607

0.67
  comM Vibrio campbellii strain DS40M4

65.878

99.607

0.656
  comM Legionella pneumophila str. Paris

50.895

98.821

0.503
  comM Legionella pneumophila strain ERS1305867

50.895

98.821

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.796

100

0.473

Multiple sequence alignment