Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD06_RS26045 Genome accession   NZ_CP101082
Coordinates   5309468..5310988 (+) Length   506 a.a.
NCBI ID   WP_370604507.1    Uniprot ID   -
Organism   Citrobacter braakii strain OT129     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5304468..5315988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD06_RS26025 (NMD06_26000) - 5306024..5306953 (-) 930 WP_003018014.1 branched-chain amino acid transaminase -
  NMD06_RS26030 (NMD06_26005) ilvM 5306971..5307234 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  NMD06_RS26035 (NMD06_26010) ilvG 5307231..5308877 (-) 1647 WP_370604506.1 acetolactate synthase 2 catalytic subunit -
  NMD06_RS26040 (NMD06_26015) ilvL 5309017..5309115 (-) 99 WP_001311244.1 ilv operon leader peptide -
  NMD06_RS26045 (NMD06_26020) comM 5309468..5310988 (+) 1521 WP_370604507.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD06_RS26050 (NMD06_26025) maoP 5311014..5311352 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  NMD06_RS26055 (NMD06_26030) hdfR 5311459..5312304 (+) 846 WP_085951100.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55203.13 Da        Isoelectric Point: 7.1707

>NTDB_id=708563 NMD06_RS26045 WP_370604507.1 5309468..5310988(+) (comM) [Citrobacter braakii strain OT129]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFTPNALPDDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLINSDTIQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSAMKG
ENSATVKQRVMAARERQYQRQDKLNAHLNSQDIHKYCQLRDDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQCDHI
SRQHLQEAVGYRAIDRLLIHLHKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=708563 NMD06_RS26045 WP_370604507.1 5309468..5310988(+) (comM) [Citrobacter braakii strain OT129]
ATGTCGCTATCGATTGTTCACACACGCGCCGCGCTAGGCGTGAATGCACCAGCCATTACCATCGAGGTACATATCAGCAA
CGGCCTGCCTGGTTTAACCATGGTGGGGCTGCCCGAAACGACGGTGAAAGAGGCTCGCGATCGGGTACGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCAAAGAAGATAACCATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGACGA
TATGATTTACCCATCGCTGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACAACCCATAATCTCGATACCTACGAGCTGGT
AGGCGAATTAGCCCTTACAGGCGCGTTACGCGGCGTTCCCGGCGCGATATCAAGCGCAACCGAAGCCATTCGTGCAGGCA
GGCGAATCATTGTCGCGAAAGAGAATGCCGCTGAAGTTGGATTGATACACGGTGAAGGGTGCCTGATCGCCGATCACCTG
CAGGCTGTGTGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGGCCATCATCCGCAGATTTTACGCCCAACGCATTACC
CGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACAGCTGCTGGCGGCCACAACCTCT
TGCTCATCGGTCCGCCGGGTACGGGCAAGACCATGCTAGCCAGTCGCCTCAGAGGGCTGCTCCCTCCACTTAGCAACGAT
GAAGCGCTGGAAAGTGCCGCGATACTCAGTCTGATCAATTCCGACACGATTCAAAAACAGTGGAAGCAACGCCCTTTTCG
CTCGCCACATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCCCCAGGAGAGATCTCTCTGGCGC
ACAACGGCATACTGTTCCTGGATGAGCTACCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGCGAGCCCATCGAGTCC
GGGCAGATCCATCTATCCCGCACCAGAGCAAAAATAACCTATCCTGCACGCTTTCAGCTCATAGCTGCGATGAATCCAAG
CCCGACAGGCCATTATCAGGGGAATCATAACCGCTGTACCCCAGAACAGACGCTGCGCTACCTAAATCGATTGTCAGGTC
CATTTCTTGACCGCTTCGACCTCTCCCTCGAAATTCCTTTACCGCCGCCCGGCATACTCAGCCAGAGCGCGATGAAAGGG
GAAAATAGCGCAACGGTGAAGCAACGCGTTATGGCAGCGCGAGAGCGTCAGTATCAGCGACAAGACAAGTTAAACGCACA
TCTGAACAGTCAGGATATCCATAAATATTGCCAACTGCGCGACGACGATGCCCAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTGTCTATCCGCGCCTGGCTACGCTTGATTAAGGTCGCTCGAACGATTGCGGATATCGAACAATGTGATCACATC
TCGCGCCAGCATTTACAGGAGGCCGTTGGGTACCGGGCGATAGACAGGTTACTCATTCATCTGCACAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.926

100

0.585
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Glaesserella parasuis strain SC1401

57.367

100

0.577
  comM Vibrio campbellii strain DS40M4

57.738

99.605

0.575
  comM Legionella pneumophila str. Paris

47.485

98.221

0.466
  comM Legionella pneumophila strain ERS1305867

47.485

98.221

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.056

99.605

0.429