Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD21_RS25015 Genome accession   NZ_CP101060
Coordinates   5212459..5213979 (+) Length   506 a.a.
NCBI ID   WP_286634921.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain OT205     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5207459..5218979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD21_RS24995 (NMD21_24970) - 5209015..5209944 (-) 930 WP_003018014.1 branched-chain amino acid transaminase -
  NMD21_RS25000 (NMD21_24975) ilvM 5209962..5210225 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  NMD21_RS25005 (NMD21_24980) ilvG 5210222..5211868 (-) 1647 WP_003829032.1 acetolactate synthase 2 catalytic subunit -
  NMD21_RS25010 (NMD21_24985) ilvL 5212008..5212106 (-) 99 WP_001311244.1 ilv operon leader peptide -
  NMD21_RS25015 (NMD21_24990) comM 5212459..5213979 (+) 1521 WP_286634921.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD21_RS25020 (NMD21_24995) maoP 5214004..5214342 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  NMD21_RS25025 (NMD21_25000) hdfR 5214449..5215294 (+) 846 WP_095533172.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55088.03 Da        Isoelectric Point: 7.2884

>NTDB_id=708427 NMD21_RS25015 WP_286634921.1 5212459..5213979(+) (comM) [Citrobacter portucalensis strain OT205]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPEATVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFTPCALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDKLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQNQVKG
EDSATVKQRVMAARERQYQRQNKLNAHLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=708427 NMD21_RS25015 WP_286634921.1 5212459..5213979(+) (comM) [Citrobacter portucalensis strain OT205]
ATGTCACTATCGATTGTTCACACACGCGCTGCGCTGGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAGCAACGGTAAAAGAGGCCCGCGATCGGGTTCGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCAAAGAAGATAACCATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACTACCCATAATCTCGATACATATGAGCTGGT
AGGCGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCCGGTGCGATCTCAAGTGCAACCGAAGCCATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTGGGACTGATACACGGTGAAGGGTGCTTGATAGCCGATCACCTA
CAGGCCGTATGCGCATTCCTCGAAGGTAAGCATGATTTAGACAGACCATCATCGGCAGATTTTACTCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCTGGCGGTCATAACCTCT
TACTCATCGGCCCTCCAGGTACGGGTAAGACCATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGTAACGAT
GAGGCACTGGAAAGCGCCGCGATTCTTAGTCTGGTCAATTCCGACAAGCTACAAAAACAGTGGAAGCAACGCCCTTTTCG
TTCGCCGCATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGCGAGATCTCTCTGGCGC
ATAACGGCATACTATTTCTGGATGAACTCCCCGAGTTTGAGCGGCGCACACTGGATGCACTGCGAGAGCCCATTGAGTCC
GGGCAGATTCATTTATCCCGCACTCGGGCAAAAATAACTTACCCCGCACGTTTTCAGCTTATTGCTGCCATGAATCCCAG
CCCAACAGGACATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACGCTACGCTACCTCAATCGATTATCAGGTC
CATTTCTTGACCGCTTCGATCTCTCCCTCGAAATCCCCTTACCGCCGCCCGGCATCCTCAGCCAGAACCAGGTAAAAGGG
GAAGATAGCGCAACGGTGAAGCAACGCGTTATGGCAGCACGAGAGCGTCAGTATCAGCGGCAGAATAAGTTAAATGCGCA
TCTGGACAGCCAGGATATCCATAAATACTGTCCACTGCGTAGCGATGATGCGCAGTGGCTTGAAGAAACGCTGGCGCATC
TCGGATTATCCATCCGCGCCTGGTTACGCCTGATAAAGGTCGCTCGAACGATCGCGGATATAGAGCAATCTGACCATATC
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGACAGATTACTCATTCATTTACAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Glaesserella parasuis strain SC1401

57.874

100

0.581
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579
  comM Haemophilus influenzae Rd KW20

57.451

100

0.579
  comM Legionella pneumophila str. Paris

47.284

98.221

0.464
  comM Legionella pneumophila strain ERS1305867

47.284

98.221

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.659

99.605

0.425