Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K6J55_RS08505 Genome accession   NZ_AP018767
Coordinates   1719673..1721202 (+) Length   509 a.a.
NCBI ID   WP_048942480.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-4 isolate 13H33     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1714673..1726202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J55_RS08480 (CHBNII4_16160) oppC 1715019..1715954 (+) 936 WP_011272393.1 oligopeptide ABC transporter permease OppC -
  K6J55_RS08485 (CHBNII4_16170) - 1715964..1716935 (+) 972 WP_005647625.1 ABC transporter ATP-binding protein -
  K6J55_RS08490 (CHBNII4_16180) oppF 1716932..1717930 (+) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  K6J55_RS08495 (CHBNII4_16190) - 1717970..1718836 (-) 867 WP_005670794.1 VirK/YbjX family protein -
  K6J55_RS08500 (CHBNII4_16200) yihA 1718941..1719558 (+) 618 WP_048942482.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  K6J55_RS08505 (CHBNII4_16210) comM 1719673..1721202 (+) 1530 WP_048942480.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K6J55_RS08510 (CHBNII4_16220) deoC 1721236..1721907 (-) 672 WP_048942478.1 deoxyribose-phosphate aldolase -
  K6J55_RS08515 (CHBNII4_16230) - 1722018..1722521 (+) 504 WP_005686413.1 protein disulfide oxidoreductase -
  K6J55_RS08520 (CHBNII4_16240) rfaD 1722574..1723500 (+) 927 WP_005690709.1 ADP-glyceromanno-heptose 6-epimerase -
  K6J55_RS08525 (CHBNII4_16250) xylB 1723551..1725032 (-) 1482 WP_032826718.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55876.33 Da        Isoelectric Point: 9.7771

>NTDB_id=70841 K6J55_RS08505 WP_048942480.1 1719673..1721202(+) (comM) [Haemophilus influenzae strain CHBN-II-4 isolate 13H33]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGNLQN
TGDRGETSAQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLSDKDAFFLENALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=70841 K6J55_RS08505 WP_048942480.1 1719673..1721202(+) (comM) [Haemophilus influenzae strain CHBN-II-4 isolate 13H33]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCACCGCTAGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCTAAGCGTATCACTGTAAATCTCGCCCCTGCGGATTTACCGAAAGAAGGCGGAAGA
TTTGATTTGCCTATCGCCATCGGAATTTTAGCCGCATCAGATCAGCTTGATGCTAGTCGCTTAAAGCAATTTGAATTTGT
GGCTGAACTTGCGCTGACGGGCCAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCTCAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCTCAAACGCTT
TTAGATGTGGTGCAATTTCTCAATGGTCAGGAAAAATTACCCCTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATCGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCGG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGGAAAACCATGTTAGCCAGCCGTTTGACAGGGCTTTTGCCT
GAAATGACAGATTTAGAAGCGATAGAAACAGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGCGCACCACATCATAGTGCATCAATGCCAGCTTTAGTTGGTGGTGGGACGATCCCTAAACCTGGCG
AAATATCCTTAGCAACAAATGGGGTACTTTTTCTTGATGAACTTCCAGAATTTGAGCGAAAAGTGTTAGATGCACTACGT
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTCGTGCTAATGCAAAAATTCAATTCCCAGCTCGTTTTCAGTTGGTGGC
AGCGATGAATCCAAGTCCGACAGGCCATTATACAGGAACACATAACCGCACTTCGCCGCAACAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCCTTTTTAGATCGTTTTGATTTGTCTATTGAAGTGCCTTTATTGCCACAAGGCAACTTACAAAAT
ACGGGCGATCGTGGTGAAACTAGCGCACAAGTACGTGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGAGCGGG
AAAAATTAACGCTTATTTGAATAGTAAAGAGATTGAGCGTGATTGCAAGTTAAGTGATAAAGATGCCTTTTTCCTTGAAA
ATGCACTGAATAAACTGGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

98.821

100

0.988
  comM Glaesserella parasuis strain SC1401

79.29

99.607

0.79
  comM Vibrio cholerae strain A1552

67.456

99.607

0.672
  comM Vibrio campbellii strain DS40M4

66.272

99.607

0.66
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.184

100

0.477

Multiple sequence alignment