Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD02_RS25995 Genome accession   NZ_CP101051
Coordinates   5272317..5273837 (+) Length   506 a.a.
NCBI ID   WP_151217294.1    Uniprot ID   -
Organism   Citrobacter meridianamericanus strain OT98     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5267317..5278837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD02_RS25975 (NMD02_25930) - 5268873..5269802 (-) 930 WP_151217290.1 branched-chain amino acid transaminase -
  NMD02_RS25980 (NMD02_25935) ilvM 5269820..5270083 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  NMD02_RS25985 (NMD02_25940) ilvG 5270080..5271726 (-) 1647 WP_151217292.1 acetolactate synthase 2 catalytic subunit -
  NMD02_RS25990 (NMD02_25945) ilvL 5271866..5271964 (-) 99 WP_001311244.1 ilv operon leader peptide -
  NMD02_RS25995 (NMD02_25950) comM 5272317..5273837 (+) 1521 WP_151217294.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD02_RS26000 (NMD02_25955) maoP 5273862..5274200 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  NMD02_RS26005 (NMD02_25960) hdfR 5274307..5275152 (+) 846 WP_151217296.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55050.90 Da        Isoelectric Point: 7.0251

>NTDB_id=708386 NMD02_RS25995 WP_151217294.1 5272317..5273837(+) (comM) [Citrobacter meridianamericanus strain OT98]
MSLSIIHTRAALGVNAPAITVEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALQAASEQLTTHNLDAYELVGELALTGALRGVPGAISSATEAIRAGRRIIVATENAAEVGLIHGEGCLIADHL
QTVCAFLEGKHDLDRPSTADFTPDAFADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSETIQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSAVKG
EDSATVKQRVIAARERQYLRQNKLNAHLNSQDIHKYCPLHSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQCDRI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=708386 NMD02_RS25995 WP_151217294.1 5272317..5273837(+) (comM) [Citrobacter meridianamericanus strain OT98]
ATGTCACTATCGATCATTCATACACGCGCCGCGTTGGGCGTAAATGCACCCGCCATTACTGTCGAGGTACATATCAGCAA
CGGCCTGCCCGGTTTAACCATGGTGGGGCTGCCGGAAACGACGGTGAAAGAGGCTCGCGATCGGGTACGCAGTGCGATAA
TTAATAGCGGGTATGAATTCCCGGCAAAGAAGATAACCATAAATCTCGCTCCAGCCGATCTTCCGAAAGAAGGGGGGCGA
TATGATTTACCTATCGCTGTTGCGCTTCAGGCCGCTTCTGAGCAGCTTACAACCCATAATCTCGATGCATATGAGCTGGT
CGGTGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCCGGCGCGATATCAAGCGCAACCGAAGCCATTCGTGCAGGCA
GGAGAATTATTGTCGCCACAGAGAATGCCGCTGAAGTTGGACTGATACACGGCGAAGGATGCCTGATCGCAGATCACCTG
CAGACCGTATGCGCATTTCTCGAAGGTAAGCACGATTTAGACAGGCCCTCAACCGCAGATTTTACGCCCGACGCATTCGC
CGACGACCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCTGGCGGTCATAACCTCT
TGCTCATTGGCCCGCCGGGTACGGGCAAGACCATGTTGGCCAGTCGCCTCAGAGGTCTGCTCCCACCGCTTAGCAACGAT
GAAGCGCTGGAAAGTGCTGCGATACTCAGTCTGGTTAATTCCGAAACGATACAAAAACAATGGAAGCAACGCCCTTTTCG
TTCACCACATCACAGTGCTTCATTAACGGCCATGGTCGGTGGAGGCTCTATTCCTGCACCAGGCGAGATCTCTCTGGCGC
ATAACGGCATACTGTTTCTGGATGAACTACCCGAGTTTGAACGGCGTACGCTGGATGCCTTGCGCGAACCCATCGAGTCC
GGGCAGATCCATCTATCCCGCACCAGAGCAAAAATAACCTATCCCGCGCGCTTTCAACTTATAGCAGCGATGAATCCAAG
CCCTACAGGCCATTATCAGGGGAATCATAATCGCTGTACTCCAGAACAGACGCTGCGCTACCTCAATCGACTGTCAGGAC
CATTTCTCGATCGCTTCGACCTCTCCCTCGAAATCCCCTTACCACCGCCCGGCATACTCAGTCAGAGCGCAGTGAAAGGG
GAAGATAGTGCAACGGTTAAGCAACGCGTTATAGCAGCACGAGAGCGTCAGTATCTGCGGCAAAATAAGTTAAACGCGCA
CCTGAACAGCCAGGATATTCATAAATACTGCCCACTGCACAGCGACGATGCTCAATGGCTGGAAGAAACGCTCGCGCATC
TCGGATTATCTATCCGCGCCTGGCTGCGTCTGATAAAGGTCGCTAGAACGATTGCGGATATAGAACAATGTGATCGCATC
TCTCGCCAACACTTACAGGAAGCCGTTGGATACCGGGCGATAGACAGGTTACTCATTCATTTGCAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.964

99.209

0.585
  comM Vibrio campbellii strain DS40M4

58.765

99.209

0.583
  comM Glaesserella parasuis strain SC1401

57.677

100

0.579
  comM Haemophilus influenzae Rd KW20

57.059

100

0.575
  comM Legionella pneumophila str. Paris

47.284

98.221

0.464
  comM Legionella pneumophila strain ERS1305867

47.284

98.221

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.063

99.605

0.419