Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMD03_RS22925 Genome accession   NZ_CP101044
Coordinates   4716511..4717038 (-) Length   175 a.a.
NCBI ID   WP_016155359.1    Uniprot ID   A0AAE2J7N6
Organism   Citrobacter braakii strain OT113     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4711511..4722038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD03_RS22905 (NMD03_22840) soxR 4713154..4713612 (-) 459 WP_016155363.1 redox-sensitive transcriptional activator SoxR -
  NMD03_RS22910 (NMD03_22845) soxS 4713699..4714022 (+) 324 WP_016155362.1 superoxide response transcriptional regulator SoxS -
  NMD03_RS22915 (NMD03_22850) - 4714025..4715611 (-) 1587 WP_200084404.1 EAL domain-containing protein -
  NMD03_RS22920 (NMD03_22855) - 4716163..4716444 (+) 282 WP_016155360.1 YjcB family protein -
  NMD03_RS22925 (NMD03_22860) ssb 4716511..4717038 (-) 528 WP_016155359.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NMD03_RS22930 (NMD03_22865) uvrA 4717290..4720112 (+) 2823 WP_016155358.1 excinuclease ABC subunit UvrA -
  NMD03_RS22935 (NMD03_22870) - 4720207..4720563 (-) 357 WP_016155357.1 MmcQ/YjbR family DNA-binding protein -
  NMD03_RS22940 (NMD03_22875) aphA 4720690..4721403 (-) 714 WP_003826615.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18749.79 Da        Isoelectric Point: 5.2456

>NTDB_id=708360 NMD03_RS22925 WP_016155359.1 4716511..4717038(-) (ssb) [Citrobacter braakii strain OT113]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=708360 NMD03_RS22925 WP_016155359.1 4716511..4717038(-) (ssb) [Citrobacter braakii strain OT113]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGTGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCGGCTCCGGCAGCG
CCGTCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.586

100

0.771
  ssb Glaesserella parasuis strain SC1401

57.609

100

0.606
  ssb Neisseria meningitidis MC58

48.333

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.333

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.371