Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD04_RS25340 Genome accession   NZ_CP101040
Coordinates   5219165..5220685 (+) Length   506 a.a.
NCBI ID   WP_187260247.1    Uniprot ID   -
Organism   Citrobacter meridianamericanus strain OT115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5214165..5225685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD04_RS25320 (NMD04_25245) - 5215721..5216650 (-) 930 WP_151217290.1 branched-chain amino acid transaminase -
  NMD04_RS25325 (NMD04_25250) ilvM 5216668..5216931 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  NMD04_RS25330 (NMD04_25255) ilvG 5216928..5218574 (-) 1647 WP_187260248.1 acetolactate synthase 2 catalytic subunit -
  NMD04_RS25335 (NMD04_25260) ilvL 5218714..5218812 (-) 99 WP_001311244.1 ilv operon leader peptide -
  NMD04_RS25340 (NMD04_25265) comM 5219165..5220685 (+) 1521 WP_187260247.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD04_RS25345 (NMD04_25270) maoP 5220710..5221048 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  NMD04_RS25350 (NMD04_25275) hdfR 5221155..5222000 (+) 846 WP_151217296.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55035.93 Da        Isoelectric Point: 7.0251

>NTDB_id=708340 NMD04_RS25340 WP_187260247.1 5219165..5220685(+) (comM) [Citrobacter meridianamericanus strain OT115]
MSLSIIHTRAALGVNAPAITVEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDAYELVGELALTGALRGVPGAISSATEAIRAGRRIIVATENAAEVGLIHGEGCLIADHL
QTVCAFLEGKHDLDRPSTADFTPDAFADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSETIQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSAVKG
EDSATVKQRVIAARERQYLRQNKLNAHLNSQDIHKYCPLHSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQCDRI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=708340 NMD04_RS25340 WP_187260247.1 5219165..5220685(+) (comM) [Citrobacter meridianamericanus strain OT115]
ATGTCACTATCGATCATTCATACACGCGCCGCGTTGGGCGTAAATGCACCCGCCATTACTGTCGAGGTACATATCAGCAA
CGGCCTGCCCGGTTTAACCATGGTGGGGCTGCCGGAAACGACGGTGAAAGAGGCTCGCGATCGGGTACGCAGTGCGATAA
TTAATAGCGGGTATGAATTCCCGGCAAAGAAGATAACCATAAATCTCGCTCCAGCCGATCTTCCGAAAGAAGGGGGGCGA
TATGATTTACCTATCGCTGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACAACCCATAATCTCGATGCATATGAGCTGGT
CGGTGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCCGGCGCGATATCAAGCGCAACCGAAGCCATTCGTGCAGGCA
GGAGAATTATTGTCGCCACAGAGAATGCCGCTGAAGTTGGACTGATACACGGCGAAGGATGCCTGATCGCAGATCACCTG
CAGACCGTATGCGCATTTCTCGAAGGTAAGCACGATTTAGACAGGCCCTCAACCGCAGATTTTACGCCCGACGCATTCGC
CGACGACCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCTGGCGGTCATAACCTCT
TGCTCATTGGCCCGCCGGGTACGGGCAAGACCATGTTGGCCAGTCGCCTCAGAGGTCTGCTCCCACCGCTTAGCAACGAT
GAAGCGCTGGAAAGTGCTGCGATACTCAGTCTGGTTAATTCCGAAACGATACAAAAACAATGGAAGCAACGCCCTTTTCG
TTCACCACATCACAGTGCTTCATTAACGGCCATGGTCGGTGGAGGCTCTATTCCTGCACCAGGCGAGATCTCTCTGGCGC
ATAACGGCATACTGTTTCTGGATGAACTACCCGAGTTTGAACGGCGTACGCTGGATGCCTTGCGCGAACCCATCGAGTCC
GGGCAGATCCATCTATCCCGCACCAGAGCAAAAATAACCTATCCCGCGCGCTTTCAACTTATAGCAGCGATGAATCCAAG
CCCTACAGGCCATTATCAGGGGAATCATAATCGCTGTACTCCAGAACAGACGCTGCGCTACCTCAATCGACTGTCAGGAC
CATTTCTCGATCGCTTCGACCTCTCCCTCGAAATCCCCTTACCACCGCCCGGCATACTCAGTCAGAGCGCAGTGAAAGGG
GAAGATAGTGCAACGGTTAAGCAACGCGTTATAGCAGCACGAGAGCGTCAGTATCTGCGGCAAAATAAGTTAAACGCGCA
CCTGAACAGCCAGGATATTCATAAATACTGCCCACTGCACAGCGACGATGCTCAATGGCTGGAAGAAACGCTCGCGCATC
TCGGATTATCTATCCGCGCCTGGCTGCGTCTGATAAAGGTCGCTAGAACGATTGCGGATATAGAACAATGTGATCGCATC
TCTCGCCAACACTTACAGGAAGCCGTTGGATACCGGGCGATAGACAGGTTACTCATTCATTTGCAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.163

99.209

0.587
  comM Vibrio campbellii strain DS40M4

58.964

99.209

0.585
  comM Glaesserella parasuis strain SC1401

57.874

100

0.581
  comM Haemophilus influenzae Rd KW20

57.255

100

0.577
  comM Legionella pneumophila str. Paris

47.485

98.221

0.466
  comM Legionella pneumophila strain ERS1305867

47.485

98.221

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.262

99.605

0.421