Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMD15_RS14875 Genome accession   NZ_CP101030
Coordinates   3297419..3297979 (-) Length   186 a.a.
NCBI ID   WP_370598219.1    Uniprot ID   -
Organism   Plesiomonas shigelloides strain OT201     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3292419..3302979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD15_RS14875 (NMD15_14840) ssb 3297419..3297979 (-) 561 WP_370598219.1 single-stranded DNA-binding protein Machinery gene
  NMD15_RS14880 (NMD15_14845) uvrA 3298239..3301094 (+) 2856 WP_370598220.1 excinuclease ABC subunit UvrA -
  NMD15_RS14885 (NMD15_14850) - 3301194..3302324 (-) 1131 WP_115150230.1 alanine--glyoxylate aminotransferase family protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20309.34 Da        Isoelectric Point: 5.0019

>NTDB_id=708261 NMD15_RS14875 WP_370598219.1 3297419..3297979(-) (ssb) [Plesiomonas shigelloides strain OT201]
MARGGINKVILIGNLGQDPEVRYMPNGNAVANISIATSESWRDKNTGEQKEMTEWHRVVLYRRLAEVAGEYLKKGAKVYI
EGKLRTRKWQDQNGQERYSTEIQADEMQMLDSRGGMGASAGQSQGGWGQPQQPQNQGFAPQQSQGNYGNAPAQGGYANNT
PNAAPANNAGFGSAEPPMDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=708261 NMD15_RS14875 WP_370598219.1 3297419..3297979(-) (ssb) [Plesiomonas shigelloides strain OT201]
ATGGCCAGAGGTGGCATTAACAAAGTTATCCTGATCGGTAATTTGGGGCAGGACCCTGAAGTACGCTACATGCCGAACGG
TAATGCTGTCGCTAATATCAGCATCGCGACCTCTGAAAGCTGGCGCGACAAGAATACCGGCGAGCAAAAAGAGATGACCG
AATGGCACCGTGTTGTGCTGTACCGTCGTCTGGCAGAAGTAGCGGGTGAATACCTGAAGAAAGGCGCCAAGGTTTACATT
GAAGGTAAACTGCGTACTCGTAAATGGCAGGATCAGAACGGCCAAGAGCGTTACAGCACCGAAATCCAAGCCGATGAGAT
GCAAATGCTGGATTCCCGTGGCGGCATGGGCGCATCGGCAGGCCAATCACAAGGCGGTTGGGGTCAACCACAGCAGCCAC
AAAACCAAGGGTTTGCTCCACAGCAGTCCCAAGGTAACTACGGCAATGCCCCAGCGCAAGGCGGCTACGCCAACAATACC
CCGAATGCGGCACCAGCGAACAACGCCGGTTTCGGTAGCGCTGAGCCACCAATGGATTTTGATGACGACATTCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

61.929

100

0.656
  ssb Glaesserella parasuis strain SC1401

57.979

100

0.586
  ssb Neisseria meningitidis MC58

48.087

98.387

0.473
  ssb Neisseria gonorrhoeae MS11

48.066

97.312

0.468
  ssb Latilactobacillus sakei subsp. sakei 23K

35.751

100

0.371