Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K6J54_RS09065 Genome accession   NZ_AP018766
Coordinates   1837230..1837577 (-) Length   115 a.a.
NCBI ID   WP_038440076.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-3 isolate 13H41     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1832230..1842577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J54_RS09045 (CHBNII3_17300) bioB 1832619..1833620 (-) 1002 WP_005647862.1 biotin synthase BioB -
  K6J54_RS09050 (CHBNII3_17310) thiQ 1833733..1834380 (-) 648 WP_105876659.1 thiamine ABC transporter ATP-binding protein -
  K6J54_RS09055 (CHBNII3_17320) thiP 1834364..1835980 (-) 1617 WP_105876660.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  K6J54_RS09060 (CHBNII3_17330) thiB 1835985..1836983 (-) 999 WP_105876661.1 thiamine ABC transporter substrate binding subunit -
  K6J54_RS09065 (CHBNII3_17340) comE1/comEA 1837230..1837577 (-) 348 WP_038440076.1 helix-hairpin-helix domain-containing protein Machinery gene
  K6J54_RS09070 (CHBNII3_17350) ispH 1837746..1838690 (-) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K6J54_RS09075 (CHBNII3_17360) lspA 1838687..1839202 (-) 516 WP_042593739.1 signal peptidase II -
  K6J54_RS09080 (CHBNII3_17370) - 1839272..1840831 (-) 1560 WP_042593738.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12307.12 Da        Isoelectric Point: 8.0085

>NTDB_id=70807 K6J54_RS09065 WP_038440076.1 1837230..1837577(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
MKLMKTLFTSVVLCGALVASSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=70807 K6J54_RS09065 WP_038440076.1 1837230..1837577(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGCTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

95.536

97.391

0.93
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

99.13

0.583
  comEA Vibrio cholerae C6706

42.727

95.652

0.409
  comEA Vibrio cholerae strain A1552

42.727

95.652

0.409
  comEA Vibrio campbellii strain DS40M4

40.179

97.391

0.391

Multiple sequence alignment