Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   K6J54_RS00275 Genome accession   NZ_AP018766
Coordinates   57850..58362 (-) Length   170 a.a.
NCBI ID   WP_013526183.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-3 isolate 13H41     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52850..63362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J54_RS00260 (CHBNII3_00520) comQ 56156..56443 (-) 288 WP_042593720.1 DUF5374 domain-containing protein Machinery gene
  K6J54_RS00265 (CHBNII3_00530) comP 56436..57119 (-) 684 WP_042593719.1 DUF2572 family protein Machinery gene
  K6J54_RS00270 (CHBNII3_00540) comO 57134..57850 (-) 717 WP_042593718.1 type II secretion system protein J Machinery gene
  K6J54_RS00275 (CHBNII3_00550) comN 57850..58362 (-) 513 WP_013526183.1 type II secretion system protein Machinery gene
  K6J54_RS00280 (CHBNII3_00560) suhB 58562..59365 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  K6J54_RS00285 (CHBNII3_00570) nrfE 59474..61381 (+) 1908 WP_042593717.1 heme lyase NrfEFG subunit NrfE -
  K6J54_RS00290 (CHBNII3_00580) - 61381..61911 (+) 531 WP_005664151.1 DsbE family thiol:disulfide interchange protein -
  K6J54_RS00295 (CHBNII3_00590) nrfF 61908..63062 (+) 1155 WP_042593716.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19849.10 Da        Isoelectric Point: 8.9743

>NTDB_id=70780 K6J54_RS00275 WP_013526183.1 57850..58362(-) (comN) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
MQKGMTLVELLIGLAIISIALNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=70780 K6J54_RS00275 WP_013526183.1 57850..58362(-) (comN) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACAGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAGCGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

99.412

100

0.994

Multiple sequence alignment