Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD63_RS15760 Genome accession   NZ_CP100873
Coordinates   3446326..3447846 (+) Length   506 a.a.
NCBI ID   WP_369115288.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3441326..3452846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD63_RS15735 (NMD63_15700) - 3441520..3442449 (-) 930 WP_370550611.1 branched-chain amino acid transaminase -
  NMD63_RS15740 (NMD63_15705) ilvM 3442499..3442789 (-) 291 WP_005290111.1 acetolactate synthase 2 small subunit -
  NMD63_RS15745 (NMD63_15710) ilvG 3442786..3444435 (-) 1650 WP_370550612.1 acetolactate synthase 2 catalytic subunit -
  NMD63_RS15750 (NMD63_15715) ilvL 3444574..3444672 (-) 99 WP_071526333.1 ilv operon leader peptide -
  NMD63_RS15755 (NMD63_15720) - 3444823..3446037 (-) 1215 WP_370550613.1 MFS transporter -
  NMD63_RS15760 (NMD63_15725) comM 3446326..3447846 (+) 1521 WP_369115288.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD63_RS15765 (NMD63_15730) tdh 3447912..3448937 (-) 1026 WP_005297094.1 L-threonine 3-dehydrogenase -
  NMD63_RS15770 (NMD63_15735) - 3448947..3450143 (-) 1197 WP_370550614.1 glycine C-acetyltransferase -
  NMD63_RS15775 (NMD63_15740) rfaD 3450450..3451379 (+) 930 WP_005290097.1 ADP-glyceromanno-heptose 6-epimerase -
  NMD63_RS15780 (NMD63_15745) rfaF 3451403..3452479 (+) 1077 WP_035597595.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54089.14 Da        Isoelectric Point: 9.5088

>NTDB_id=707393 NMD63_RS15760 WP_369115288.1 3446326..3447846(+) (comM) [Edwardsiella tarda strain GT9]
MTLASVYTRAALGMQAPEVRIEAHIGNGLPSFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLSSVHAEHQYEFMGELALSGELRPVPGILPAALSATQAGRTLIAPRGNAGELGLLPAPRPFIAPS
LLAVCAFLSENATLERPARCLPSNDYAQQGDMADIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLAYRLPGILPPMT
SDEALAQAAISSLAYPGSTQTRYGVRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRAQIKVSFPARVQLVAAMNPSNAGFGSSAGGRTTPNQVLRYLSRLSGPLLDRFDLSIDVPLLPAGVLASQRA
TGEDSATLRQRVTAVRDRQYARSGQLNAHLEGAERDRVCRLSTHDAQFLEQALTRLGLSVRAWHRLLKVARTLADMEGVE
TIAQRHLAEALSYRAVDRLLQTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=707393 NMD63_RS15760 WP_369115288.1 3446326..3447846(+) (comM) [Edwardsiella tarda strain GT9]
ATGACACTGGCCAGCGTATACACCCGTGCCGCCCTCGGCATGCAAGCACCCGAAGTCAGGATCGAGGCACATATCGGCAA
TGGATTGCCGAGTTTTACTCTGGTTGGCCTCCCAGAGACGGCGGTGCGTGAGGCAAAAGATCGTGTGCGTTGTGCCATCC
TAAACAGCGGATTCCAGTTTCCGGCTAAGCGCATCACCCTCAACCTGGCTCCCGCCGACCTACCGAAGGAGGGAGGCCGC
TACGATCTTCCCATGGCACTGGCCCTATTGCTCGCTGCAGGGCAACTCTCCAGCGTACACGCCGAGCATCAATATGAGTT
TATGGGTGAGCTCGCCCTCTCCGGTGAACTCCGCCCAGTACCCGGTATTCTACCGGCCGCACTGAGTGCCACACAGGCGG
GGCGAACCTTAATCGCCCCCAGAGGCAACGCCGGTGAGCTCGGGCTGTTGCCTGCACCGCGTCCCTTCATCGCCCCATCC
CTACTTGCCGTCTGCGCCTTCCTCAGTGAAAACGCCACATTGGAAAGACCAGCGCGCTGTCTACCCAGTAACGACTATGC
ACAGCAGGGGGACATGGCTGATATCATCGGTCAAGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCCGCCGGAGGGCATA
ATCTGCTACTGCTTGGGCCACCAGGTACCGGTAAAACGATGCTGGCCTATCGCCTACCGGGGATCCTGCCACCGATGACC
AGCGATGAGGCGTTAGCGCAGGCCGCCATCAGCAGCCTGGCATATCCAGGTTCGACGCAGACACGCTATGGCGTACGCCC
CTTTCGCGCACCGCACCATAGCGCCTCGATGGCAGCGCTGATCGGCGGCGGATCCTTGCCGCGTCCTGGAGAGATCTCTC
TGGCGCATCACGGCGTACTCTTCCTTGATGAATTAGCCGAGTTCGATCGACGTACCTTAGATGCACTGCGCGAGCCGTTA
GAGTCAGGTGTTGTCCACCTCTCCCGTGCCCAGATCAAAGTCAGCTTTCCCGCCCGCGTACAATTGGTTGCGGCGATGAA
TCCCAGCAATGCGGGATTTGGGAGCAGTGCGGGAGGCCGCACCACACCGAATCAGGTACTGCGCTACCTCTCTCGCCTTT
CTGGGCCGCTGCTCGACCGCTTCGATCTCTCGATTGATGTCCCCCTATTACCCGCGGGAGTATTGGCCAGCCAACGAGCG
ACGGGCGAAGACAGTGCCACACTACGCCAACGCGTTACCGCTGTCCGTGATCGGCAGTATGCTCGCAGTGGTCAGTTGAA
TGCTCATCTCGAGGGCGCAGAGCGCGATCGTGTCTGCCGCCTGAGTACACACGATGCACAATTTCTAGAACAGGCCCTGA
CACGCCTCGGTTTATCGGTACGCGCTTGGCACCGGCTGCTCAAGGTCGCTCGTACACTCGCGGACATGGAGGGCGTCGAG
ACTATCGCCCAACGCCATCTGGCTGAAGCGCTGAGCTATCGCGCCGTCGATCGGCTCTTACAGACATTGCAACGGGGGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Vibrio campbellii strain DS40M4

57.256

99.407

0.569
  comM Haemophilus influenzae Rd KW20

56.607

100

0.567
  comM Glaesserella parasuis strain SC1401

55.118

100

0.553
  comM Legionella pneumophila str. Paris

47.295

98.617

0.466
  comM Legionella pneumophila strain ERS1305867

47.295

98.617

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.433