Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD65_RS16245 Genome accession   NZ_CP100867
Coordinates   3518366..3519886 (+) Length   506 a.a.
NCBI ID   WP_370546200.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3513366..3524886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD65_RS16220 (NMD65_16170) - 3513567..3514496 (-) 930 WP_098142764.1 branched-chain amino acid transaminase -
  NMD65_RS16225 (NMD65_16175) ilvM 3514546..3514836 (-) 291 WP_005290111.1 acetolactate synthase 2 small subunit -
  NMD65_RS16230 (NMD65_16180) ilvG 3514833..3516482 (-) 1650 WP_370546199.1 acetolactate synthase 2 catalytic subunit -
  NMD65_RS16235 (NMD65_16185) ilvL 3516615..3516713 (-) 99 WP_071523989.1 ilv operon leader peptide -
  NMD65_RS16240 (NMD65_16190) - 3516864..3518078 (-) 1215 WP_205438993.1 MFS transporter -
  NMD65_RS16245 (NMD65_16195) comM 3518366..3519886 (+) 1521 WP_370546200.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD65_RS16250 (NMD65_16200) tdh 3519952..3520977 (-) 1026 WP_205438995.1 L-threonine 3-dehydrogenase -
  NMD65_RS16255 (NMD65_16205) kbl 3520987..3522183 (-) 1197 WP_205438996.1 glycine C-acetyltransferase -
  NMD65_RS16260 (NMD65_16210) rfaD 3522491..3523420 (+) 930 WP_205438997.1 ADP-glyceromanno-heptose 6-epimerase -
  NMD65_RS16265 (NMD65_16215) rfaF 3523444..3524520 (+) 1077 WP_205438998.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54210.39 Da        Isoelectric Point: 8.7738

>NTDB_id=707353 NMD65_RS16245 WP_370546200.1 3518366..3519886(+) (comM) [Edwardsiella tarda strain GT12]
MTLASVYTRAALGMQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLSSVHAEHQYEFMGELAISGELRPVPGILPAALSATQAGRTLIAPSGNADELGLLPAPRPLIAPS
LLAVCAFLSEDATLERPARCLPSDDYAQQGDMAEIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLAYRLPGILPPMT
SDEALAQAAISSLAYPGSMQARYGVRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRAQLKISFPARVQLVAAMNPSHVGFGSRAGGRTTPNQVLRYLSRLSGPLLDRFDLSIDVPLLPAGVLASQRA
MGEDSATLRQRVTAVRDRQYSRSGQLNAHLEGAERDRVCRLSTHDAQFLEQALTRLGLSVRAWHRLLKVARTLADMEGVE
TIAQRHLAEALSYRAVDRLLQTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=707353 NMD65_RS16245 WP_370546200.1 3518366..3519886(+) (comM) [Edwardsiella tarda strain GT12]
ATGACACTGGCCAGCGTATACACCCGTGCCGCCCTCGGCATGCAAGCCCCCGAAGTCAGGATCGAGGCACATATTGGCAA
TGGATTGCCGGGTTTTACTCTGGTGGGTCTCCCGGAGACGGCGGTGCGTGAGGCGAAAGATCGTGTACGCTGCGCCATCC
TAAACAGCGGATTCCAGTTTCCGGCTAAACGCATCACCCTCAACCTGGCTCCCGCCGACCTCCCGAAGGAGGGAGGCCGC
TACGATCTTCCCATGGCACTGGCCCTATTGCTCGCCGCAGGGCAACTCTCCAGCGTACACGCCGAGCATCAATATGAGTT
TATGGGTGAACTCGCCATCTCCGGTGAACTCCGCCCGGTGCCGGGTATTCTACCGGCCGCGCTGAGTGCCACACAGGCGG
GGCGAACCTTAATCGCCCCCAGTGGCAACGCCGATGAGCTCGGGCTATTGCCCGCACCGCGCCCCCTCATCGCCCCGTCC
CTACTTGCCGTCTGCGCCTTCCTCAGTGAGGACGCCACATTGGAAAGACCAGCGCGCTGTCTACCCAGTGACGACTATGC
ACAGCAGGGGGACATGGCTGAGATCATCGGCCAAGCGCAGGCCCGGCGTGCCCTGGAGATCGCCGCCGCCGGGGGACACA
ACCTGCTACTGCTTGGACCACCGGGTACCGGTAAAACGATGCTGGCCTATCGCCTACCGGGGATCCTGCCACCGATGACC
AGCGATGAGGCATTAGCACAGGCCGCCATCAGTAGCCTGGCATATCCAGGTTCGATGCAGGCACGCTATGGTGTTCGTCC
CTTTCGCGCACCACACCATAGCGCCTCGATGGCGGCACTGATCGGCGGCGGATCCCTGCCGCGTCCTGGAGAGATCTCTC
TGGCGCATCACGGCGTGCTCTTCCTTGATGAATTAGCCGAGTTCGATCGGCGTACCTTGGATGCGCTGCGCGAGCCGTTA
GAGTCAGGTGTTGTCCACCTCTCCCGTGCCCAGCTCAAAATCAGCTTTCCCGCCCGCGTACAATTAGTCGCGGCGATGAA
TCCCAGCCATGTGGGATTTGGGAGCCGCGCGGGAGGACGCACCACACCGAATCAGGTGCTGCGCTACCTCTCTCGCCTTT
CTGGGCCGCTGCTCGACCGCTTCGATCTCTCGATTGACGTCCCCCTATTACCCGCGGGAGTCTTGGCCAGCCAACGAGCG
ATGGGCGAAGACAGCGCCACGCTGCGTCAACGCGTTACCGCTGTCCGTGATCGACAGTATTCGCGCAGCGGTCAGTTGAA
TGCTCATCTCGAGGGCGCAGAGCGCGATCGTGTCTGCCGCCTGAGTACACACGATGCACAATTTCTAGAACAGGCCCTGA
CACGCCTCGGTTTATCGGTACGCGCTTGGCACCGGCTGCTCAAGGTCGCTCGTACACTCGCGGACATGGAGGGCGTCGAG
ACTATCGCCCAACGCCATCTGGCTGAAGCGCTGAGCTATCGCGCCGTCGATCGGCTCTTACAGACATTGCAACGGGGGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.449

99.407

0.581
  comM Vibrio campbellii strain DS40M4

57.058

99.407

0.567
  comM Haemophilus influenzae Rd KW20

56.607

100

0.567
  comM Glaesserella parasuis strain SC1401

54.528

100

0.547
  comM Legionella pneumophila str. Paris

45.892

98.617

0.453
  comM Legionella pneumophila strain ERS1305867

45.892

98.617

0.453
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.137

100

0.435