Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD68_RS15670 Genome accession   NZ_CP100861
Coordinates   3394612..3396132 (+) Length   506 a.a.
NCBI ID   WP_370549340.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3389612..3401132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD68_RS15645 (NMD68_15630) - 3389808..3390737 (-) 930 WP_370547080.1 branched-chain amino acid transaminase -
  NMD68_RS15650 (NMD68_15635) ilvM 3390787..3391077 (-) 291 WP_370549337.1 acetolactate synthase 2 small subunit -
  NMD68_RS15655 (NMD68_15640) ilvG 3391074..3392723 (-) 1650 WP_370549338.1 acetolactate synthase 2 catalytic subunit -
  NMD68_RS15660 (NMD68_15645) ilvL 3392861..3392959 (-) 99 WP_071523989.1 ilv operon leader peptide -
  NMD68_RS15665 (NMD68_15650) - 3393110..3394324 (-) 1215 WP_370549339.1 MFS transporter -
  NMD68_RS15670 (NMD68_15655) comM 3394612..3396132 (+) 1521 WP_370549340.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD68_RS15675 (NMD68_15660) tdh 3396198..3397223 (-) 1026 WP_370547570.1 L-threonine 3-dehydrogenase -
  NMD68_RS15680 (NMD68_15665) - 3397233..3398429 (-) 1197 WP_370547085.1 glycine C-acetyltransferase -
  NMD68_RS15685 (NMD68_15670) rfaD 3398737..3399666 (+) 930 WP_370547086.1 ADP-glyceromanno-heptose 6-epimerase -
  NMD68_RS15690 (NMD68_15675) rfaF 3399690..3400766 (+) 1077 WP_205438998.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54190.41 Da        Isoelectric Point: 9.0480

>NTDB_id=707313 NMD68_RS15670 WP_370549340.1 3394612..3396132(+) (comM) [Edwardsiella tarda strain GT18]
MTLASVYTRAALGMQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLSSVHAEHQYEFMGELALSGELRPVPGILPAALSATQAGRTLIAPSGNADELGLLPAPRPLIAPS
LLAVCAFLSKDATLERPARCLPSDDYAQQGDMAEIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLAYRLPGILPPMT
SDEALAQAAISSLAYPGSMQARYGVRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRAQLKISFPARVQLVAAMNPSHVGFGSRAGGRTTPNQVLRYLSRLSGPLLDRFDLSIDVPLLPAGVLASQRA
MGEDSATLRQRVTAVRDRQYSRSGQLNAHLEGAERDRVCHLSTHDAQFLEQALTRLGLSVRAWHRLLKVARTLADMEGVE
TIAQRHLAEALSYRAVDRLLQTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=707313 NMD68_RS15670 WP_370549340.1 3394612..3396132(+) (comM) [Edwardsiella tarda strain GT18]
ATGACACTGGCCAGCGTATACACCCGTGCCGCCCTCGGCATGCAAGCCCCCGAAGTCAGGATCGAGGCACATATCGGTAA
TGGATTGCCGGGTTTTACTCTGGTGGGTCTCCCGGAGACGGCGGTGCGTGAGGCGAAAGATCGTGTACGCTGCGCCATCC
TAAACAGCGGATTCCAGTTTCCGGCTAAACGCATCACCCTCAACCTGGCTCCCGCCGACCTCCCGAAGGAGGGAGGCCGC
TACGATCTTCCCATGGCACTGGCCCTATTGCTCGCCGCAGGGCAACTCTCCAGCGTACACGCCGAGCATCAATATGAGTT
TATGGGTGAACTCGCCCTCTCCGGTGAACTCCGCCCGGTGCCGGGTATTCTACCGGCCGCGCTGAGTGCCACACAGGCGG
GGCGAACCTTAATCGCCCCCAGTGGCAACGCCGATGAGCTCGGGCTATTGCCCGCACCGCGCCCCCTCATCGCCCCGTCC
CTACTTGCCGTCTGCGCCTTCCTCAGTAAGGACGCCACATTGGAAAGACCAGCGCGCTGTCTACCCAGTGACGACTATGC
ACAGCAGGGGGACATGGCTGAGATCATCGGCCAAGCGCAGGCCCGGCGTGCCCTGGAGATCGCCGCCGCCGGGGGGCACA
ACCTGCTACTGCTTGGACCACCGGGTACCGGTAAAACGATGCTGGCCTATCGCCTACCGGGGATCCTGCCACCGATGACC
AGCGATGAGGCGTTAGCACAGGCCGCCATCAGTAGCCTGGCATATCCAGGTTCGATGCAGGCACGCTATGGTGTTCGTCC
CTTTCGCGCACCACACCATAGCGCCTCGATGGCGGCACTGATCGGCGGCGGATCCCTGCCACGTCCTGGAGAAATCTCTC
TGGCGCATCACGGCGTGCTCTTCCTTGATGAATTAGCCGAGTTCGATCGGCGTACCTTGGATGCGCTGCGCGAGCCGTTA
GAGTCAGGTGTTGTCCACCTCTCCCGTGCCCAGCTCAAAATCAGCTTTCCCGCCCGCGTACAATTAGTCGCGGCGATGAA
TCCCAGCCATGTGGGATTTGGGAGCCGCGCGGGAGGACGCACCACACCGAATCAGGTGCTGCGCTACCTCTCTCGCCTTT
CTGGGCCGCTGCTCGACCGCTTCGATCTCTCGATTGACGTCCCCCTATTACCCGCAGGAGTCTTGGCCAGCCAACGAGCG
ATGGGCGAAGACAGCGCCACGCTGCGTCAACGCGTTACCGCCGTCCGTGATCGGCAGTATTCGCGCAGCGGTCAGCTGAA
TGCTCATCTCGAGGGCGCAGAGCGCGATCGCGTCTGCCACCTGAGTACACACGATGCACAATTTCTAGAACAGGCCCTGA
CACGCCTCGGTTTATCGGTACGCGCTTGGCACCGGCTGCTCAAGGTTGCTCGTACACTCGCGGACATGGAGGGCGTCGAG
ACTATCGCCCAACGCCATCTGGCTGAAGCGCTGAGCTATCGCGCCGTCGATCGGCTCTTACAGACATTGCAACGGGGGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Haemophilus influenzae Rd KW20

56.805

100

0.569
  comM Vibrio campbellii strain DS40M4

57.256

99.407

0.569
  comM Glaesserella parasuis strain SC1401

55.098

100

0.555
  comM Legionella pneumophila str. Paris

46.092

98.617

0.455
  comM Legionella pneumophila strain ERS1305867

46.092

98.617

0.455
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.137

100

0.435