Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD72_RS15730 Genome accession   NZ_CP100850
Coordinates   3433187..3434707 (+) Length   506 a.a.
NCBI ID   WP_369115288.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3428187..3439707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD72_RS15705 (NMD72_15685) - 3428381..3429310 (-) 930 WP_005290114.1 branched-chain amino acid transaminase -
  NMD72_RS15710 (NMD72_15690) ilvM 3429360..3429650 (-) 291 WP_005290111.1 acetolactate synthase 2 small subunit -
  NMD72_RS15715 (NMD72_15695) ilvG 3429647..3431296 (-) 1650 WP_370558319.1 acetolactate synthase 2 catalytic subunit -
  NMD72_RS15720 (NMD72_15700) ilvL 3431435..3431533 (-) 99 WP_071526333.1 ilv operon leader peptide -
  NMD72_RS15725 (NMD72_15705) - 3431684..3432898 (-) 1215 WP_109611142.1 MFS transporter -
  NMD72_RS15730 (NMD72_15710) comM 3433187..3434707 (+) 1521 WP_369115288.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD72_RS15735 (NMD72_15715) tdh 3434773..3435798 (-) 1026 WP_005297094.1 L-threonine 3-dehydrogenase -
  NMD72_RS15740 (NMD72_15720) - 3435808..3437004 (-) 1197 WP_370558320.1 glycine C-acetyltransferase -
  NMD72_RS15745 (NMD72_15725) rfaD 3437311..3438240 (+) 930 WP_005290097.1 ADP-glyceromanno-heptose 6-epimerase -
  NMD72_RS15750 (NMD72_15730) rfaF 3438264..3439340 (+) 1077 WP_035597595.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54089.14 Da        Isoelectric Point: 9.5088

>NTDB_id=707252 NMD72_RS15730 WP_369115288.1 3433187..3434707(+) (comM) [Edwardsiella tarda strain GT28]
MTLASVYTRAALGMQAPEVRIEAHIGNGLPSFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLSSVHAEHQYEFMGELALSGELRPVPGILPAALSATQAGRTLIAPRGNAGELGLLPAPRPFIAPS
LLAVCAFLSENATLERPARCLPSNDYAQQGDMADIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLAYRLPGILPPMT
SDEALAQAAISSLAYPGSTQTRYGVRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRAQIKVSFPARVQLVAAMNPSNAGFGSSAGGRTTPNQVLRYLSRLSGPLLDRFDLSIDVPLLPAGVLASQRA
TGEDSATLRQRVTAVRDRQYARSGQLNAHLEGAERDRVCRLSTHDAQFLEQALTRLGLSVRAWHRLLKVARTLADMEGVE
TIAQRHLAEALSYRAVDRLLQTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=707252 NMD72_RS15730 WP_369115288.1 3433187..3434707(+) (comM) [Edwardsiella tarda strain GT28]
ATGACACTGGCCAGCGTATACACCCGTGCCGCCCTCGGCATGCAAGCACCCGAAGTCAGGATCGAGGCACATATCGGCAA
TGGATTACCGAGTTTTACTCTGGTTGGCCTCCCAGAGACGGCGGTGCGTGAGGCAAAAGATCGTGTGCGTTGTGCCATCC
TAAACAGCGGATTCCAGTTTCCGGCTAAGCGCATCACCCTCAACCTGGCTCCCGCCGACCTACCGAAGGAGGGAGGCCGC
TACGATCTTCCCATGGCACTGGCCCTATTGCTCGCTGCAGGGCAACTCTCCAGCGTACACGCCGAGCATCAATATGAGTT
TATGGGTGAGCTCGCCCTCTCCGGTGAACTCCGTCCAGTACCCGGTATTCTACCGGCCGCACTGAGTGCCACACAGGCGG
GGCGAACCTTAATCGCCCCCAGAGGCAACGCCGGTGAGCTCGGGCTGTTGCCTGCACCGCGTCCCTTCATCGCCCCATCC
CTACTTGCCGTCTGCGCCTTCCTCAGTGAAAACGCCACATTGGAAAGACCAGCGCGCTGTCTACCCAGTAACGACTATGC
ACAGCAGGGGGACATGGCTGATATCATCGGTCAAGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCCGCCGGAGGGCATA
ATCTGCTACTGCTTGGACCACCGGGTACCGGTAAAACGATGCTGGCCTATCGCCTACCGGGGATCCTGCCACCGATGACC
AGCGATGAGGCGTTAGCGCAGGCCGCCATCAGCAGCCTGGCATATCCAGGTTCGACGCAGACACGCTATGGCGTACGCCC
CTTTCGCGCACCGCACCATAGCGCCTCGATGGCAGCGCTGATCGGCGGCGGATCCTTGCCGCGTCCTGGAGAGATCTCTC
TGGCGCATCACGGCGTACTCTTCCTTGATGAATTAGCCGAGTTCGATCGACGTACCTTAGATGCACTGCGCGAGCCGTTA
GAGTCAGGTGTTGTCCACCTCTCCCGTGCCCAGATCAAAGTCAGCTTTCCCGCCCGCGTACAATTGGTTGCGGCGATGAA
TCCCAGCAATGCGGGATTTGGGAGCAGTGCGGGAGGACGCACCACACCGAATCAGGTACTGCGCTACCTCTCTCGCCTTT
CTGGGCCGCTGCTCGACCGCTTCGATCTCTCGATTGATGTCCCCCTATTACCCGCGGGAGTATTGGCCAGCCAACGAGCG
ACGGGCGAAGACAGTGCCACACTACGCCAACGCGTTACCGCTGTCCGTGATCGGCAGTATGCTCGCAGTGGTCAGTTGAA
TGCTCATCTCGAGGGCGCAGAGCGCGATCGTGTCTGCCGCCTGAGTACACACGATGCACAATTTCTAGAACAGGCCCTGA
CACGCCTCGGTTTATCGGTACGCGCTTGGCACCGGCTGCTCAAGGTCGCTCGTACACTCGCGGACATGGAGGGCGTCGAG
ACTATCGCCCAACGCCATCTGGCTGAAGCGCTGAGCTATCGCGCCGTCGATCGGCTCTTACAGACATTGCAACGGGGGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Vibrio campbellii strain DS40M4

57.256

99.407

0.569
  comM Haemophilus influenzae Rd KW20

56.607

100

0.567
  comM Glaesserella parasuis strain SC1401

55.118

100

0.553
  comM Legionella pneumophila str. Paris

47.295

98.617

0.466
  comM Legionella pneumophila strain ERS1305867

47.295

98.617

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.433