Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD74_RS15725 Genome accession   NZ_CP100843
Coordinates   3423409..3424929 (+) Length   506 a.a.
NCBI ID   WP_370547084.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3418409..3429929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD74_RS15700 (NMD74_15695) - 3418609..3419538 (-) 930 WP_370547080.1 branched-chain amino acid transaminase -
  NMD74_RS15705 (NMD74_15700) ilvM 3419588..3419878 (-) 291 WP_370547081.1 acetolactate synthase 2 small subunit -
  NMD74_RS15710 (NMD74_15705) ilvG 3419875..3421524 (-) 1650 WP_370547082.1 acetolactate synthase 2 catalytic subunit -
  NMD74_RS15715 (NMD74_15710) ilvL 3421658..3421756 (-) 99 WP_071523989.1 ilv operon leader peptide -
  NMD74_RS15720 (NMD74_15715) - 3421907..3423121 (-) 1215 WP_370547083.1 MFS transporter -
  NMD74_RS15725 (NMD74_15720) comM 3423409..3424929 (+) 1521 WP_370547084.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD74_RS15730 (NMD74_15725) tdh 3424995..3426020 (-) 1026 WP_370547570.1 L-threonine 3-dehydrogenase -
  NMD74_RS15735 (NMD74_15730) - 3426030..3427226 (-) 1197 WP_370547085.1 glycine C-acetyltransferase -
  NMD74_RS15740 (NMD74_15735) rfaD 3427534..3428463 (+) 930 WP_370547086.1 ADP-glyceromanno-heptose 6-epimerase -
  NMD74_RS15745 (NMD74_15740) rfaF 3428487..3429563 (+) 1077 WP_370547087.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54179.37 Da        Isoelectric Point: 9.2940

>NTDB_id=707212 NMD74_RS15725 WP_370547084.1 3423409..3424929(+) (comM) [Edwardsiella tarda strain GT38]
MTLASVYTRAALGMQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLSSVHAEHQYEFMGELALSGELRPVPGILPAALSATQAGRTLIAPSGNADELGLLPAPRPLIAPS
LLAVCAFLSKDATLERPARCLPSDDYAQQGDMAEIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLAYRLPGILPPMT
SDEALAQAAISSLAYPGSMQARYGVRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRAQLKISFPARVQLVAAMNPSHVGFGSRAGGRTTPNQVLRYLSRLSGPLLDRFDLSIDVPLLPAGVLASQRA
TGEDSATLRQRVTAVRDRQYSRSGQLNAHLEGAERDRVCRLSTHDAQFLEQALTRLGLSVRAWHRLLKVARTLADMEGVE
TIAQRHLAEALSYRAVDRLLQTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=707212 NMD74_RS15725 WP_370547084.1 3423409..3424929(+) (comM) [Edwardsiella tarda strain GT38]
ATGACACTGGCCAGCGTGTACACCCGTGCCGCCCTCGGCATGCAAGCCCCCGAAGTCAGGATCGAAGCACATATCGGTAA
TGGATTGCCGGGTTTTACTCTGGTTGGTCTCCCGGAGACGGCGGTGCGTGAGGCGAAAGATCGTGTACGCTGCGCCATCC
TAAACAGCGGATTCCAGTTTCCGGCTAAACGCATCACCCTCAACCTGGCTCCCGCCGACCTCCCGAAGGAGGGAGGCCGC
TACGATCTTCCCATGGCACTGGCCCTATTGCTCGCCGCAGGGCAACTCTCCAGCGTACACGCCGAGCATCAATATGAGTT
TATGGGTGAACTCGCCCTCTCCGGTGAACTCCGCCCGGTGCCGGGTATTCTACCGGCCGCGCTGAGTGCCACACAGGCGG
GGCGAACCTTAATCGCCCCCAGTGGCAACGCCGATGAGCTCGGGCTATTGCCCGCACCGCGCCCCCTCATCGCCCCGTCC
CTACTTGCCGTCTGCGCCTTCCTCAGTAAGGACGCCACATTGGAAAGACCAGCGCGCTGTCTACCCAGTGACGACTATGC
ACAGCAGGGGGACATGGCTGAGATCATCGGCCAAGCGCAGGCCCGGCGTGCCCTGGAGATCGCCGCCGCCGGGGGACACA
ACCTGCTACTGCTTGGACCACCGGGTACCGGTAAAACGATGCTGGCCTATCGCCTACCGGGGATCCTGCCACCGATGACC
AGCGATGAGGCGTTAGCACAGGCCGCCATCAGTAGCCTGGCATATCCAGGTTCGATGCAGGCACGCTATGGTGTTCGTCC
CTTTCGCGCACCACACCATAGCGCCTCGATGGCGGCACTGATCGGCGGCGGATCCCTGCCGCGTCCTGGAGAGATCTCTC
TGGCGCATCACGGCGTGCTCTTCCTTGATGAATTAGCCGAGTTCGATCGGCGTACCTTGGATGCGCTGCGCGAGCCGTTA
GAGTCAGGTGTTGTCCACCTCTCCCGTGCCCAGCTCAAAATCAGCTTTCCCGCCCGCGTACAATTAGTCGCGGCGATGAA
TCCCAGCCATGTGGGATTTGGGAGCCGCGCGGGAGGACGCACCACACCGAATCAGGTGCTGCGCTACCTCTCCCGCCTTT
CTGGGCCGCTGCTCGACCGCTTCGATCTCTCGATTGATGTCCCCCTATTACCCGCGGGAGTCTTGGCCAGCCAACGAGCG
ACGGGCGAAGACAGTGCCACGCTGCGTCAACGTGTTACCGCCGTCCGTGATCGGCAGTATTCGCGCAGCGGTCAGTTGAA
TGCTCATCTCGAGGGCGCAGAGCGCGATCGCGTCTGCCGCCTGAGTACACACGATGCACAATTTCTAGAACAAGCCCTGA
CACGCCTCGGTTTATCGGTACGCGCTTGGCACCGGCTGCTCAAGGTCGCTCGTACACTCGCGGACATGGAGGGCGTCGAG
ACTATCGCCCAACGCCATCTGGCTGAAGCGCTGAGCTATCGCGCCGTCGATCGGCTCTTACAGACATTGCAACGGGGGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Haemophilus influenzae Rd KW20

56.805

100

0.569
  comM Vibrio campbellii strain DS40M4

57.256

99.407

0.569
  comM Glaesserella parasuis strain SC1401

54.724

100

0.549
  comM Legionella pneumophila str. Paris

46.493

98.617

0.458
  comM Legionella pneumophila strain ERS1305867

46.493

98.617

0.458
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.137

100

0.435