Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD78_RS15640 Genome accession   NZ_CP100824
Coordinates   3397987..3399507 (+) Length   506 a.a.
NCBI ID   WP_370549340.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT59     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3392987..3404507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD78_RS15615 (NMD78_15570) - 3393187..3394116 (-) 930 WP_370547080.1 branched-chain amino acid transaminase -
  NMD78_RS15620 (NMD78_15575) ilvM 3394166..3394456 (-) 291 WP_370549337.1 acetolactate synthase 2 small subunit -
  NMD78_RS15625 (NMD78_15580) ilvG 3394453..3396102 (-) 1650 WP_370549338.1 acetolactate synthase 2 catalytic subunit -
  NMD78_RS15630 (NMD78_15585) ilvL 3396236..3396334 (-) 99 WP_071523989.1 ilv operon leader peptide -
  NMD78_RS15635 (NMD78_15590) - 3396485..3397699 (-) 1215 WP_370549339.1 MFS transporter -
  NMD78_RS15640 (NMD78_15595) comM 3397987..3399507 (+) 1521 WP_370549340.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD78_RS15645 (NMD78_15600) tdh 3399573..3400598 (-) 1026 WP_370547570.1 L-threonine 3-dehydrogenase -
  NMD78_RS15650 (NMD78_15605) - 3400608..3401804 (-) 1197 WP_370547085.1 glycine C-acetyltransferase -
  NMD78_RS15655 (NMD78_15610) rfaD 3402112..3403041 (+) 930 WP_370547086.1 ADP-glyceromanno-heptose 6-epimerase -
  NMD78_RS15660 (NMD78_15615) rfaF 3403065..3404141 (+) 1077 WP_205438998.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54190.41 Da        Isoelectric Point: 9.0480

>NTDB_id=707152 NMD78_RS15640 WP_370549340.1 3397987..3399507(+) (comM) [Edwardsiella tarda strain GT59]
MTLASVYTRAALGMQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLSSVHAEHQYEFMGELALSGELRPVPGILPAALSATQAGRTLIAPSGNADELGLLPAPRPLIAPS
LLAVCAFLSKDATLERPARCLPSDDYAQQGDMAEIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLAYRLPGILPPMT
SDEALAQAAISSLAYPGSMQARYGVRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRAQLKISFPARVQLVAAMNPSHVGFGSRAGGRTTPNQVLRYLSRLSGPLLDRFDLSIDVPLLPAGVLASQRA
MGEDSATLRQRVTAVRDRQYSRSGQLNAHLEGAERDRVCHLSTHDAQFLEQALTRLGLSVRAWHRLLKVARTLADMEGVE
TIAQRHLAEALSYRAVDRLLQTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=707152 NMD78_RS15640 WP_370549340.1 3397987..3399507(+) (comM) [Edwardsiella tarda strain GT59]
ATGACACTGGCCAGCGTATACACCCGTGCCGCCCTCGGCATGCAAGCCCCCGAAGTCAGGATCGAGGCACATATCGGTAA
TGGATTGCCGGGTTTTACTCTGGTGGGTCTCCCGGAGACGGCGGTGCGTGAGGCGAAAGATCGTGTACGCTGCGCCATCC
TAAACAGCGGATTCCAGTTTCCGGCTAAACGCATCACCCTCAACCTGGCTCCCGCCGACCTCCCGAAGGAGGGAGGCCGC
TACGATCTTCCCATGGCACTGGCCCTATTGCTCGCCGCAGGGCAACTCTCCAGCGTACACGCCGAGCATCAATATGAGTT
TATGGGTGAACTCGCCCTCTCCGGTGAACTCCGCCCGGTGCCGGGTATTCTACCGGCCGCGCTGAGTGCCACACAGGCGG
GGCGAACCTTAATCGCCCCCAGTGGCAACGCCGATGAGCTCGGGCTATTGCCCGCACCGCGCCCCCTCATCGCCCCGTCC
CTACTTGCCGTCTGCGCCTTCCTCAGTAAGGACGCCACATTGGAAAGACCAGCGCGCTGTCTACCCAGTGACGACTATGC
ACAGCAGGGGGACATGGCTGAGATCATCGGCCAAGCGCAGGCCCGGCGTGCCCTGGAGATCGCCGCCGCCGGGGGGCACA
ACCTGCTACTGCTTGGACCACCGGGTACCGGTAAAACGATGCTGGCCTATCGCCTACCGGGGATCCTGCCACCGATGACC
AGCGATGAGGCGTTAGCACAGGCCGCCATCAGTAGCCTGGCATATCCAGGTTCGATGCAGGCACGCTATGGTGTTCGTCC
CTTTCGCGCACCACACCATAGCGCCTCGATGGCGGCACTGATCGGCGGCGGATCCCTGCCACGTCCTGGAGAAATCTCTC
TGGCGCATCACGGCGTGCTCTTCCTTGATGAATTAGCCGAGTTCGATCGGCGTACCTTGGATGCGCTGCGCGAGCCGTTA
GAGTCAGGTGTTGTCCACCTCTCCCGTGCCCAGCTCAAAATCAGCTTTCCCGCCCGCGTACAATTAGTCGCGGCGATGAA
TCCCAGCCATGTGGGATTTGGGAGCCGCGCGGGAGGACGCACCACACCGAATCAGGTGCTGCGCTACCTCTCTCGCCTTT
CTGGGCCGCTGCTCGACCGCTTCGATCTCTCGATTGACGTCCCCCTATTACCCGCAGGAGTCTTGGCCAGCCAACGAGCG
ATGGGCGAAGACAGCGCCACGCTGCGTCAACGCGTTACCGCCGTCCGTGATCGGCAGTATTCGCGCAGCGGTCAGCTGAA
TGCTCATCTCGAGGGCGCAGAGCGCGATCGCGTCTGCCACCTGAGTACACACGATGCACAATTTCTAGAACAGGCCCTGA
CACGCCTCGGTTTATCGGTACGCGCTTGGCACCGGCTGCTCAAGGTTGCTCGTACACTCGCGGACATGGAGGGCGTCGAG
ACTATCGCCCAACGCCATCTGGCTGAAGCGCTGAGCTATCGCGCCGTCGATCGGCTCTTACAGACATTGCAACGGGGGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Haemophilus influenzae Rd KW20

56.805

100

0.569
  comM Vibrio campbellii strain DS40M4

57.256

99.407

0.569
  comM Glaesserella parasuis strain SC1401

55.098

100

0.555
  comM Legionella pneumophila str. Paris

46.092

98.617

0.455
  comM Legionella pneumophila strain ERS1305867

46.092

98.617

0.455
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.137

100

0.435