Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD79_RS15650 Genome accession   NZ_CP100822
Coordinates   3405845..3407365 (+) Length   506 a.a.
NCBI ID   WP_370555471.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT61     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3400845..3412365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD79_RS15625 (NMD79_15615) - 3401039..3401968 (-) 930 WP_005290114.1 branched-chain amino acid transaminase -
  NMD79_RS15630 (NMD79_15620) ilvM 3402018..3402308 (-) 291 WP_005290111.1 acetolactate synthase 2 small subunit -
  NMD79_RS15635 (NMD79_15625) ilvG 3402305..3403954 (-) 1650 WP_035597580.1 acetolactate synthase 2 catalytic subunit -
  NMD79_RS15640 (NMD79_15630) ilvL 3404093..3404191 (-) 99 WP_071526333.1 ilv operon leader peptide -
  NMD79_RS15645 (NMD79_15635) - 3404342..3405556 (-) 1215 WP_109611142.1 MFS transporter -
  NMD79_RS15650 (NMD79_15640) comM 3405845..3407365 (+) 1521 WP_370555471.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD79_RS15655 (NMD79_15645) tdh 3407431..3408456 (-) 1026 WP_370555472.1 L-threonine 3-dehydrogenase -
  NMD79_RS15660 (NMD79_15650) - 3408466..3409662 (-) 1197 WP_005290100.1 glycine C-acetyltransferase -
  NMD79_RS15665 (NMD79_15655) rfaD 3409969..3410898 (+) 930 WP_005290097.1 ADP-glyceromanno-heptose 6-epimerase -
  NMD79_RS15670 (NMD79_15660) rfaF 3410922..3411998 (+) 1077 WP_035597595.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54128.22 Da        Isoelectric Point: 9.6823

>NTDB_id=707133 NMD79_RS15650 WP_370555471.1 3405845..3407365(+) (comM) [Edwardsiella tarda strain GT61]
MTLASVYTRAALGMQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLSSVHAEHQYEFMGELALSGELRPVPGILPAALSATQAGRTLIAPRGNAGELGLLPAPRPFIAPS
LLAVCAFLSENATLERPARCLPSNDYAQQGDMADIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLAYRLPGILPPMT
SDEALAQAAISSLAYPGSTQTRYGVRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRAQIKVSFPARVQLVAAMNPSNAGFGSRAGGRTTPNQVLRYLSRLSGPLLDRFDLSIDVPLLPAGVLASQRA
TGEDSATLRQRVTAVRDRQYARSGQLNAHLEGAERDRVCRLSTHDAQFLEQALTRLGLSVRAWHRLLKVARTLADMEGVE
TIAQRHLAEALSYRAVDRLLQTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=707133 NMD79_RS15650 WP_370555471.1 3405845..3407365(+) (comM) [Edwardsiella tarda strain GT61]
ATGACACTGGCCAGCGTATACACCCGTGCCGCCCTCGGCATGCAAGCACCCGAAGTCAGGATCGAGGCACATATCGGCAA
TGGATTGCCGGGTTTTACTCTGGTTGGCCTCCCAGAGACGGCGGTGCGTGAGGCAAAAGATCGTGTGCGTTGTGCCATCC
TAAACAGCGGATTCCAGTTTCCGGCTAAGCGCATCACCCTCAACCTGGCTCCCGCCGACCTACCGAAGGAGGGAGGCCGC
TACGATCTTCCCATGGCACTGGCCCTATTGCTCGCCGCAGGGCAACTCTCCAGCGTACACGCCGAGCATCAATATGAGTT
TATGGGTGAGCTCGCCCTCTCCGGTGAACTCCGCCCAGTACCCGGTATTCTACCGGCCGCACTGAGTGCCACACAGGCGG
GGCGAACCTTAATCGCCCCCAGAGGCAACGCCGGTGAGCTCGGGCTGTTGCCTGCACCGCGTCCCTTCATCGCCCCATCC
CTACTTGCCGTCTGCGCCTTCCTCAGTGAAAACGCCACATTGGAAAGACCAGCGCGCTGTCTACCCAGTAACGACTATGC
ACAGCAGGGGGACATGGCTGATATCATCGGTCAAGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCCGCCGGAGGGCATA
ATCTGCTACTGCTTGGACCACCGGGTACCGGTAAAACGATGCTGGCCTATCGCCTACCGGGGATCCTGCCACCGATGACC
AGCGATGAGGCGTTAGCGCAGGCCGCCATCAGCAGCCTGGCATATCCAGGTTCGACGCAGACACGCTATGGCGTACGCCC
CTTTCGCGCACCGCACCATAGCGCCTCGATGGCAGCGCTGATCGGCGGCGGATCCTTGCCGCGTCCTGGAGAGATCTCTC
TGGCGCATCACGGCGTACTCTTCCTTGATGAATTAGCCGAGTTCGATCGACGTACCTTAGATGCACTGCGCGAGCCGTTA
GAGTCAGGTGTTGTCCACCTCTCCCGTGCCCAGATCAAAGTCAGCTTTCCCGCCCGCGTACAATTGGTTGCGGCGATGAA
TCCCAGCAATGCGGGATTTGGGAGCCGTGCGGGAGGACGCACCACACCGAATCAGGTGCTGCGCTACCTCTCTCGCCTTT
CTGGGCCGCTGCTCGACCGCTTCGATCTCTCGATTGATGTCCCCCTATTACCCGCGGGAGTATTGGCCAGCCAACGAGCG
ACGGGCGAAGACAGTGCCACACTACGTCAACGCGTTACCGCTGTCCGTGATCGGCAGTATGCTCGCAGTGGTCAGTTGAA
TGCTCATCTCGAGGGCGCAGAACGCGATCGTGTCTGCCGCCTGAGTACACACGATGCACAATTTCTAGAACAGGCCCTGA
CACGCCTCGGTTTATCGGTACGCGCTTGGCACCGGCTGCTCAAGGTCGCTCGTACACTCGCGGACATGGAGGGCGTCGAG
ACTATCGCCCAACGCCATCTGGCTGAAGCGCTGAGCTATCGCGCCGTCGATCGGCTCTTACAGACATTGCAACGGGGGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.847

99.407

0.585
  comM Vibrio campbellii strain DS40M4

57.455

99.407

0.571
  comM Haemophilus influenzae Rd KW20

56.805

100

0.569
  comM Glaesserella parasuis strain SC1401

55.315

100

0.555
  comM Legionella pneumophila str. Paris

47.094

98.617

0.464
  comM Legionella pneumophila strain ERS1305867

47.094

98.617

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.307

100

0.435