Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD80_RS17190 Genome accession   NZ_CP100817
Coordinates   3617934..3619454 (+) Length   506 a.a.
NCBI ID   WP_370558993.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT63     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3612934..3624454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD80_RS17165 (NMD80_17135) - 3613128..3614057 (-) 930 WP_035607899.1 branched-chain amino acid transaminase -
  NMD80_RS17170 (NMD80_17140) ilvM 3614107..3614397 (-) 291 WP_005290111.1 acetolactate synthase 2 small subunit -
  NMD80_RS17175 (NMD80_17145) ilvG 3614394..3616043 (-) 1650 WP_370558991.1 acetolactate synthase 2 catalytic subunit -
  NMD80_RS17180 (NMD80_17150) ilvL 3616182..3616280 (-) 99 WP_071523989.1 ilv operon leader peptide -
  NMD80_RS17185 (NMD80_17155) - 3616431..3617645 (-) 1215 WP_370558992.1 MFS transporter -
  NMD80_RS17190 (NMD80_17160) comM 3617934..3619454 (+) 1521 WP_370558993.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD80_RS17195 (NMD80_17165) tdh 3619520..3620545 (-) 1026 WP_035607910.1 L-threonine 3-dehydrogenase -
  NMD80_RS17200 (NMD80_17170) kbl 3620555..3621751 (-) 1197 WP_302528743.1 glycine C-acetyltransferase -
  NMD80_RS17205 (NMD80_17175) rfaD 3622058..3622987 (+) 930 WP_035607915.1 ADP-glyceromanno-heptose 6-epimerase -
  NMD80_RS17210 (NMD80_17180) rfaF 3623011..3624087 (+) 1077 WP_035597595.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54007.98 Da        Isoelectric Point: 9.3006

>NTDB_id=707112 NMD80_RS17190 WP_370558993.1 3617934..3619454(+) (comM) [Edwardsiella tarda strain GT63]
MTLASVYTRAALGMQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLSSVHAEHQYEFMGELALSGELRPVPGILPAALSATQAGRTLIAPSGNADELGLLPAPRPFIAPS
LLAVCAFLSESATLERPARCLPSNDYAQQGDMADIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLAYRLAGILPPMT
SDEALAQAAISSLAYPGSTQTRYGVRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRAQIKVSFPARVQLVAAMNPSNAGFGSGAGGRTTPNQVLRYLSRLSGPLLDRFDLSIDVPRLPAGVLASQRA
TGEDSATLRQRVTAVRDRQYARSGQLNAHLEGAERDRVCRLSTHDAQFLEQALTRLGLSVRAWHRLLKVARTLADMEGVE
TIAQRHLAEALSYRAVDRLLQTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=707112 NMD80_RS17190 WP_370558993.1 3617934..3619454(+) (comM) [Edwardsiella tarda strain GT63]
ATGACACTGGCCAGCGTATACACCCGTGCCGCTCTCGGCATGCAAGCCCCCGAAGTCAGGATCGAGGCACATATCGGCAA
TGGATTGCCGGGTTTTACTCTGGTTGGCCTCCCAGAGACGGCGGTGCGTGAGGCGAAAGATCGAGTGCGTTGTGCCATCC
TAAACAGCGGATTCCAGTTTCCGGCTAAGCGCATCACCCTCAACCTGGCTCCCGCCGACCTGCCGAAGGAGGGCGGTCGC
TACGATCTTCCCATGGCACTGGCCCTATTGCTCGCCGCAGGGCAACTCTCCAGCGTGCACGCCGAGCATCAATATGAGTT
TATGGGTGAGCTCGCCCTCTCCGGTGAACTCCGCCCGGTACCCGGTATTCTACCGGCCGCGCTGAGTGCCACACAGGCGG
GGCGAACCTTAATCGCCCCCAGTGGCAACGCCGATGAGCTCGGGCTGTTGCCTGCACCGCGTCCCTTCATCGCCCCATCC
CTACTTGCCGTCTGCGCCTTCCTCAGTGAAAGCGCCACATTGGAAAGACCAGCGCGCTGTCTACCCAGTAACGACTATGC
ACAGCAGGGGGACATGGCTGATATCATCGGCCAAGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCCGCCGGGGGGCATA
ATCTGCTACTGCTTGGACCACCGGGTACCGGTAAAACGATGCTGGCCTATCGCCTAGCGGGGATCCTGCCACCGATGACC
AGCGATGAGGCGTTAGCGCAGGCCGCCATCAGCAGCCTGGCATATCCAGGCTCGACGCAGACACGCTATGGCGTACGCCC
CTTTCGCGCACCGCACCATAGCGCCTCGATGGCAGCGCTGATCGGCGGCGGATCCTTGCCGCGTCCTGGAGAGATCTCTC
TGGCGCATCACGGCGTGCTCTTCCTTGATGAATTAGCCGAGTTCGATCGACGTACCTTAGATGCGCTGCGCGAGCCGTTA
GAGTCAGGTGTTGTCCACCTCTCCCGTGCCCAGATCAAAGTCAGCTTTCCCGCCCGCGTACAATTGGTAGCGGCGATGAA
TCCCAGCAATGCGGGATTTGGGAGCGGTGCGGGAGGACGCACCACACCGAATCAGGTGCTGCGCTACCTCTCTCGCCTTT
CTGGGCCGCTGCTCGACCGCTTCGATCTCTCGATTGATGTCCCCCGATTACCCGCGGGAGTATTGGCCAGCCAACGAGCG
ACGGGCGAAGACAGTGCCACACTACGTCAACGCGTTACCGCTGTCCGTGATCGGCAGTATGCTCGTAGTGGTCAGTTGAA
TGCTCATCTCGAGGGTGCAGAGCGCGATCGTGTCTGCCGCTTGAGTACACACGATGCACAATTTCTAGAACAGGCCCTGA
CACGCCTCGGTTTATCGGTACGCGCTTGGCACCGGCTGCTCAAGGTCGCTCGTACACTCGCGGACATGGAGGGCGTCGAG
ACTATCGCCCAACGCCATCTGGCTGAAGCGCTGAGCTATCGCGCCGTCGATCGGCTCTTACAGACATTGCAACGGGGATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.245

99.407

0.589
  comM Vibrio campbellii strain DS40M4

57.853

99.407

0.575
  comM Haemophilus influenzae Rd KW20

56.805

100

0.569
  comM Glaesserella parasuis strain SC1401

55.512

100

0.557
  comM Legionella pneumophila str. Paris

47.094

98.617

0.464
  comM Legionella pneumophila strain ERS1305867

47.094

98.617

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.913

100

0.431