Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD81_RS15690 Genome accession   NZ_CP100814
Coordinates   3436784..3438304 (+) Length   506 a.a.
NCBI ID   WP_077999935.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT64     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3431784..3443304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD81_RS15665 (NMD81_15665) - 3431978..3432907 (-) 930 WP_035607899.1 branched-chain amino acid transaminase -
  NMD81_RS15670 (NMD81_15670) ilvM 3432957..3433247 (-) 291 WP_005290111.1 acetolactate synthase 2 small subunit -
  NMD81_RS15675 (NMD81_15675) ilvG 3433244..3434893 (-) 1650 WP_370553865.1 acetolactate synthase 2 catalytic subunit -
  NMD81_RS15680 (NMD81_15680) ilvL 3435032..3435130 (-) 99 WP_071523989.1 ilv operon leader peptide -
  NMD81_RS15685 (NMD81_15685) - 3435281..3436495 (-) 1215 WP_370553866.1 MFS transporter -
  NMD81_RS15690 (NMD81_15690) comM 3436784..3438304 (+) 1521 WP_077999935.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD81_RS15695 (NMD81_15695) tdh 3438370..3439395 (-) 1026 WP_370553867.1 L-threonine 3-dehydrogenase -
  NMD81_RS15700 (NMD81_15700) - 3439405..3440601 (-) 1197 WP_035607913.1 glycine C-acetyltransferase -
  NMD81_RS15705 (NMD81_15705) rfaD 3440907..3441836 (+) 930 WP_035607915.1 ADP-glyceromanno-heptose 6-epimerase -
  NMD81_RS15710 (NMD81_15710) rfaF 3441860..3442936 (+) 1077 WP_370553868.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54033.03 Da        Isoelectric Point: 9.5088

>NTDB_id=707090 NMD81_RS15690 WP_077999935.1 3436784..3438304(+) (comM) [Edwardsiella tarda strain GT64]
MTLASVYTRAALGMQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLSSVHAEHQYEFMGELALSGELRPVPGILPAALSATQAGRTLIAPSGNAGELGLLPAPRPFIAPS
LLAVCAFLSENATLERPARCLPSNDYAQQGDMADIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLAYRLPGILPPMT
SDEALAQAAISSLAYPGSTQTRYGVRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRAQIKVSFPARVQLVAAMNPSNAGFGSSAGGRTTPNQVLRYLSRLSGPLLDRFDLSIDVPRLPAGVLASQRA
TGEDSATLRQRVTAVRDRQYARSGQLNAHLEGAERDRVCRLSTHDAQFLEQALTRLGLSVRAWHRLLKVARTLADMEGVE
TIAQRHLAEALSYRAVDRLLQTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=707090 NMD81_RS15690 WP_077999935.1 3436784..3438304(+) (comM) [Edwardsiella tarda strain GT64]
ATGACACTGGCCAGCGTATACACCCGTGCCGCTCTCGGCATGCAAGCCCCCGAAGTCAGGATCGAGGCACATATCGGCAA
TGGATTGCCGGGTTTTACTCTGGTTGGCCTCCCAGAGACGGCGGTGCGTGAGGCAAAAGATCGTGTGCGTTGTGCCATCC
TAAACAGCGGATTCCAGTTTCCGGCTAAGCGCATCACCCTCAACCTGGCTCCCGCCGACCTACCGAAGGAGGGAGGCCGC
TACGATCTTCCCATGGCACTGGCCCTATTACTCGCCGCAGGGCAACTCTCCAGCGTGCACGCCGAGCATCAATATGAGTT
TATGGGTGAGCTCGCCCTCTCCGGTGAACTCCGCCCAGTACCCGGTATTCTACCGGCCGCACTGAGTGCCACACAGGCGG
GACGAACCTTAATCGCCCCCAGTGGCAACGCCGGTGAGCTCGGGCTGTTGCCTGCACCGCGTCCCTTCATCGCCCCATCC
CTACTTGCCGTCTGCGCCTTCCTCAGTGAAAACGCCACATTGGAAAGACCAGCGCGCTGTCTACCCAGTAACGACTATGC
ACAGCAGGGGGACATGGCTGATATCATCGGCCAAGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCCGCCGGAGGGCATA
ATCTGCTACTGCTTGGACCACCGGGTACCGGTAAAACGATGCTGGCCTATCGCCTACCGGGGATCCTGCCACCGATGACC
AGCGATGAGGCGTTAGCGCAGGCCGCCATCAGCAGCCTGGCATATCCAGGTTCGACGCAGACACGCTATGGCGTACGCCC
CTTTCGCGCACCGCACCATAGCGCCTCGATGGCAGCGCTGATCGGCGGCGGATCCTTGCCGCGTCCTGGAGAGATCTCTC
TGGCGCATCACGGCGTACTCTTCCTTGATGAATTAGCCGAGTTCGATCGACGTACCTTAGATGCACTCCGCGAGCCGTTA
GAGTCAGGTGTTGTCCACCTCTCCCGCGCCCAGATCAAAGTCAGCTTTCCCGCCCGCGTACAATTGGTAGCGGCGATGAA
TCCCAGCAATGCGGGATTTGGGAGCAGTGCAGGAGGACGCACCACACCGAATCAGGTGCTGCGCTACCTCTCTCGCCTTT
CTGGGCCGCTGCTCGACCGCTTCGATCTCTCGATTGATGTCCCCCGATTACCCGCGGGAGTATTGGCCAGCCAACGAGCG
ACGGGCGAAGACAGTGCCACACTACGTCAACGCGTTACCGCTGTCCGTGATCGGCAGTATGCTCGCAGTGGTCAGTTGAA
TGCTCATCTCGAGGGCGCAGAACGCGATCGTGTCTGCCGCCTGAGTACACACGATGCACAATTTCTAGAACAGGCCCTGA
CACGCCTCGGTTTATCGGTACGCGCTTGGCACCGGCTGCTCAAGGTCGCTCGTACACTCGCGGACATGGAGGGCGTCGAG
ACTATCGCCCAACGCCATCTGGCTGAAGCGCTGAGCTATCGCGCCGTCGATCGGCTCTTACAGACATTGCAACGGGGGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.847

99.407

0.585
  comM Vibrio campbellii strain DS40M4

57.455

99.407

0.571
  comM Haemophilus influenzae Rd KW20

56.607

100

0.567
  comM Glaesserella parasuis strain SC1401

55.118

100

0.553
  comM Legionella pneumophila str. Paris

47.094

98.617

0.464
  comM Legionella pneumophila strain ERS1305867

47.094

98.617

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.307

100

0.435