Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD83_RS15585 Genome accession   NZ_CP100802
Coordinates   3418575..3420095 (+) Length   506 a.a.
NCBI ID   WP_205438994.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT94     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3413575..3425095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD83_RS15560 (NMD83_15535) - 3413771..3414700 (-) 930 WP_098142764.1 branched-chain amino acid transaminase -
  NMD83_RS15565 (NMD83_15540) ilvM 3414750..3415040 (-) 291 WP_370553089.1 acetolactate synthase 2 small subunit -
  NMD83_RS15570 (NMD83_15545) ilvG 3415037..3416686 (-) 1650 WP_205438992.1 acetolactate synthase 2 catalytic subunit -
  NMD83_RS15575 (NMD83_15550) ilvL 3416824..3416922 (-) 99 WP_071523989.1 ilv operon leader peptide -
  NMD83_RS15580 (NMD83_15555) - 3417073..3418287 (-) 1215 WP_205438993.1 MFS transporter -
  NMD83_RS15585 (NMD83_15560) comM 3418575..3420095 (+) 1521 WP_205438994.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD83_RS15590 (NMD83_15565) tdh 3420161..3421186 (-) 1026 WP_205438995.1 L-threonine 3-dehydrogenase -
  NMD83_RS15595 (NMD83_15570) kbl 3421196..3422392 (-) 1197 WP_205438996.1 glycine C-acetyltransferase -
  NMD83_RS15600 (NMD83_15575) rfaD 3422700..3423629 (+) 930 WP_205438997.1 ADP-glyceromanno-heptose 6-epimerase -
  NMD83_RS15605 (NMD83_15580) rfaF 3423653..3424729 (+) 1077 WP_205438998.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54210.39 Da        Isoelectric Point: 8.7738

>NTDB_id=707050 NMD83_RS15585 WP_205438994.1 3418575..3420095(+) (comM) [Edwardsiella tarda strain GT94]
MTLASVYTRAALGMQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLSSVHAEHQYEFMGELALSGELRPVPGILPAALSATQAGRTLIAPSGNADELGLLPAPRPLIAPS
LLAVCAFLSEDATLERPARCLPSDDYAQQGDMAEIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLAYRLPGILPPMT
SDEALAQAAISSLAYPGSMQARYGVRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRAQLKISFPARVQLVAAMNPSHVGFGSRAGGRTTPNQVLRYLSRLSGPLLDRFDLSIDVPLLPAGVLASQRA
MGEDSATLRQRVTAVRDRQYSRSGQLNAHLEGAERDRVCRLSTHDAQFLEQALTRLGLSVRAWHRLLKVARTLADMEGVE
TIAQRHLAEALSYRAVDRLLQTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=707050 NMD83_RS15585 WP_205438994.1 3418575..3420095(+) (comM) [Edwardsiella tarda strain GT94]
ATGACACTGGCCAGCGTATACACCCGTGCCGCCCTCGGCATGCAAGCCCCCGAAGTCAGGATCGAGGCACATATTGGCAA
TGGATTGCCGGGTTTTACTCTGGTGGGTCTCCCGGAGACGGCGGTGCGTGAGGCGAAAGATCGTGTACGCTGCGCCATCC
TAAACAGCGGATTCCAGTTTCCGGCTAAACGCATCACCCTCAACCTGGCTCCCGCCGACCTCCCGAAGGAGGGAGGCCGC
TACGATCTTCCCATGGCACTGGCCCTATTGCTCGCCGCAGGGCAACTCTCCAGCGTACACGCCGAGCATCAATATGAGTT
TATGGGTGAACTCGCCCTCTCCGGTGAACTCCGCCCGGTGCCGGGTATTCTACCGGCCGCGCTGAGTGCCACACAGGCGG
GGCGAACCTTAATCGCCCCCAGTGGCAACGCCGATGAGCTCGGGCTATTGCCCGCACCGCGCCCCCTCATCGCCCCGTCC
CTACTTGCCGTCTGCGCCTTCCTCAGTGAGGACGCCACATTGGAAAGACCAGCGCGCTGTCTACCCAGTGACGACTATGC
ACAGCAGGGGGACATGGCTGAGATCATCGGCCAAGCGCAGGCCCGGCGTGCCCTGGAGATCGCCGCCGCCGGGGGACACA
ACCTGCTACTGCTTGGACCACCGGGTACCGGTAAAACGATGCTGGCCTATCGCCTACCGGGGATCCTGCCACCGATGACC
AGCGATGAGGCATTAGCACAGGCCGCCATCAGTAGCCTGGCATATCCAGGTTCGATGCAGGCACGCTATGGTGTTCGTCC
CTTTCGCGCACCACACCATAGCGCCTCGATGGCGGCACTGATCGGCGGCGGATCCCTGCCGCGTCCTGGAGAGATCTCTC
TGGCGCATCACGGCGTGCTCTTCCTTGATGAATTAGCCGAGTTCGATCGGCGTACCTTGGATGCGCTGCGCGAGCCGTTA
GAGTCAGGTGTTGTCCACCTCTCCCGTGCCCAGCTCAAAATCAGCTTTCCCGCCCGCGTACAATTAGTCGCGGCGATGAA
TCCCAGCCATGTGGGATTTGGGAGCCGCGCGGGAGGACGCACCACACCGAATCAGGTGCTGCGCTACCTCTCTCGCCTTT
CTGGGCCGCTGCTCGACCGCTTCGATCTCTCGATTGACGTCCCCCTATTACCCGCGGGAGTCTTGGCCAGCCAACGAGCG
ATGGGCGAAGACAGCGCCACGCTGCGTCAACGCGTTACCGCTGTCCGTGATCGACAGTATTCGCGCAGCGGTCAGTTGAA
TGCTCATCTCGAGGGCGCAGAGCGCGATCGTGTCTGCCGCCTGAGTACACACGATGCACAATTTCTAGAACAGGCCCTGA
CACGCCTCGGTTTATCGGTACGCGCTTGGCACCGGCTGCTCAAGGTCGCTCGTACACTCGCGGACATGGAGGGCGTCGAG
ACTATCGCCCAACGCCATCTGGCTGAAGCGCTGAGCTATCGCGCCGTCGATCGGCTCTTACAGACATTGCAACGGGGGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Haemophilus influenzae Rd KW20

56.805

100

0.569
  comM Vibrio campbellii strain DS40M4

57.256

99.407

0.569
  comM Glaesserella parasuis strain SC1401

54.724

100

0.549
  comM Legionella pneumophila str. Paris

46.092

98.617

0.455
  comM Legionella pneumophila strain ERS1305867

46.092

98.617

0.455
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

100

0.437