Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD87_RS16200 Genome accession   NZ_CP100793
Coordinates   3505012..3506532 (+) Length   506 a.a.
NCBI ID   WP_370560483.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3500012..3511532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD87_RS16175 (NMD87_16155) - 3500206..3501135 (-) 930 WP_035607899.1 branched-chain amino acid transaminase -
  NMD87_RS16180 (NMD87_16160) ilvM 3501185..3501475 (-) 291 WP_005290111.1 acetolactate synthase 2 small subunit -
  NMD87_RS16185 (NMD87_16165) ilvG 3501472..3503121 (-) 1650 WP_370560481.1 acetolactate synthase 2 catalytic subunit -
  NMD87_RS16190 (NMD87_16170) ilvL 3503260..3503358 (-) 99 WP_071523989.1 ilv operon leader peptide -
  NMD87_RS16195 (NMD87_16175) - 3503509..3504723 (-) 1215 WP_370560482.1 MFS transporter -
  NMD87_RS16200 (NMD87_16180) comM 3505012..3506532 (+) 1521 WP_370560483.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD87_RS16205 (NMD87_16185) tdh 3506598..3507623 (-) 1026 WP_035607910.1 L-threonine 3-dehydrogenase -
  NMD87_RS16210 (NMD87_16190) - 3507633..3508829 (-) 1197 WP_370560484.1 glycine C-acetyltransferase -
  NMD87_RS16215 (NMD87_16195) rfaD 3509136..3510065 (+) 930 WP_035607915.1 ADP-glyceromanno-heptose 6-epimerase -
  NMD87_RS16220 (NMD87_16200) rfaF 3510089..3511165 (+) 1077 WP_035597595.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54051.04 Da        Isoelectric Point: 8.7723

>NTDB_id=706989 NMD87_RS16200 WP_370560483.1 3505012..3506532(+) (comM) [Edwardsiella tarda strain GT107]
MTLASVYTRAALGMQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLTSVHAEHQYEFMGELALSGELRPVPGILPAALSATQAGRTLIAPSGNADELGLLPAPRPFIAPS
LLAVCAFLSESATLERPARCLPSNDYAQQGDMADIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLAYRLAGILPPMT
SDEALAQAAISSLAYPGSTQTRYGIRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRAQIKVSFPARVQLVAAMNPSNAGFGSGAGGRTTPNQVLRYLSRLSGPLLDRFDLSIDVPLLPAGVLASQRA
TGEDSATLRQRVTAVRDRQYARSGQLNAHLEGAERDRVCRLSTHDAQFLEQALTRLGLSVRAWHRLLKVARTLADMEDVE
TIAQRHLAEALSYRAVDRLLQTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=706989 NMD87_RS16200 WP_370560483.1 3505012..3506532(+) (comM) [Edwardsiella tarda strain GT107]
ATGACACTGGCCAGCGTATACACCCGTGCCGCCCTCGGCATGCAAGCCCCCGAAGTCAGGATCGAGGCACATATCGGCAA
TGGATTGCCGGGTTTTACTCTGGTTGGCCTCCCGGAGACGGCGGTGCGTGAGGCGAAAGATCGAGTGCGTTGTGCCATCC
TAAACAGCGGATTCCAGTTTCCGGCTAAGCGCATCACCCTCAACCTGGCTCCCGCCGACCTACCGAAGGAGGGCGGTCGC
TACGATCTTCCCATGGCACTGGCCCTATTGCTCGCCGCAGGGCAACTCACCAGCGTGCACGCCGAGCATCAATATGAGTT
TATGGGTGAGCTCGCCCTCTCCGGTGAACTCCGCCCGGTACCCGGTATTCTACCGGCCGCGCTGAGTGCCACACAGGCTG
GGCGAACCTTAATCGCCCCCAGTGGCAACGCCGATGAGCTCGGGCTGTTGCCTGCACCGCGTCCCTTCATCGCCCCATCC
CTACTTGCCGTCTGCGCCTTCCTCAGTGAAAGCGCCACATTGGAAAGACCAGCGCGCTGTCTACCCAGTAACGACTATGC
ACAGCAGGGGGACATGGCTGATATCATCGGCCAAGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCCGCCGGGGGGCATA
ATCTGCTACTGCTTGGACCACCGGGTACCGGTAAAACGATGCTGGCCTATCGCCTAGCGGGGATCCTGCCACCGATGACC
AGCGATGAGGCGTTAGCGCAGGCCGCCATCAGCAGCCTGGCATATCCAGGCTCGACGCAGACACGCTATGGCATACGCCC
CTTTCGCGCGCCGCACCATAGCGCCTCGATGGCGGCCCTGATCGGCGGCGGATCCTTGCCGCGTCCTGGAGAGATCTCTC
TGGCGCATCACGGCGTGCTCTTCCTTGATGAATTAGCCGAGTTCGATCGACGTACCTTAGATGCGCTGCGCGAGCCGTTA
GAGTCAGGTGTTGTCCACCTCTCCCGTGCCCAGATCAAAGTCAGCTTTCCCGCCCGCGTACAATTGGTAGCGGCGATGAA
TCCCAGCAATGCGGGATTTGGGAGCGGTGCGGGAGGACGCACCACACCGAATCAGGTGCTGCGCTACCTCTCTCGCCTTT
CTGGGCCGCTGCTCGACCGCTTCGATCTCTCGATTGATGTCCCCCTATTACCTGCGGGAGTATTGGCCAGCCAACGAGCG
ACGGGCGAAGACAGTGCCACACTACGTCAACGCGTTACCGCTGTCCGTGATCGGCAGTATGCTCGCAGTGGTCAGTTGAA
TGCTCATCTCGAGGGCGCAGAGCGCGATCGTGTCTGCCGCCTGAGTACACACGATGCACAATTTCTAGAACAGGCCCTGA
CACGCCTCGGTTTATCGGTACGCGCTTGGCACCGGCTGCTCAAGGTCGCTCGTACACTCGCGGACATGGAGGACGTCGAG
ACTATCGCCCAACGCCATCTGGCTGAAGCGCTGAGCTATCGCGCCGTCGATCGGCTCTTACAGACATTGCAACGGGGATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.046

99.407

0.587
  comM Vibrio campbellii strain DS40M4

57.654

99.407

0.573
  comM Haemophilus influenzae Rd KW20

56.805

100

0.569
  comM Glaesserella parasuis strain SC1401

55.512

100

0.557
  comM Legionella pneumophila str. Paris

47.094

98.617

0.464
  comM Legionella pneumophila strain ERS1305867

47.094

98.617

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.433