Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD88_RS16200 Genome accession   NZ_CP100789
Coordinates   3506876..3508396 (+) Length   506 a.a.
NCBI ID   WP_047060668.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT109     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3501876..3513396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD88_RS16175 (NMD88_16165) - 3502070..3502999 (-) 930 WP_370557185.1 branched-chain amino acid transaminase -
  NMD88_RS16180 (NMD88_16170) ilvM 3503049..3503339 (-) 291 WP_005290111.1 acetolactate synthase 2 small subunit -
  NMD88_RS16185 (NMD88_16175) ilvG 3503336..3504985 (-) 1650 WP_005290110.1 acetolactate synthase 2 catalytic subunit -
  NMD88_RS16190 (NMD88_16180) ilvL 3505124..3505222 (-) 99 WP_071526333.1 ilv operon leader peptide -
  NMD88_RS16195 (NMD88_16185) - 3505373..3506587 (-) 1215 WP_109611142.1 MFS transporter -
  NMD88_RS16200 (NMD88_16190) comM 3506876..3508396 (+) 1521 WP_047060668.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD88_RS16205 (NMD88_16195) tdh 3508462..3509487 (-) 1026 WP_035597589.1 L-threonine 3-dehydrogenase -
  NMD88_RS16210 (NMD88_16200) - 3509497..3510693 (-) 1197 WP_370557186.1 glycine C-acetyltransferase -
  NMD88_RS16215 (NMD88_16205) rfaD 3511000..3511929 (+) 930 WP_005290097.1 ADP-glyceromanno-heptose 6-epimerase -
  NMD88_RS16220 (NMD88_16210) rfaF 3511953..3513029 (+) 1077 WP_370557187.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53990.00 Da        Isoelectric Point: 9.3007

>NTDB_id=706968 NMD88_RS16200 WP_047060668.1 3506876..3508396(+) (comM) [Edwardsiella tarda strain GT109]
MTLASVYTRAALGMQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLSSVHAEHQYEFMGELALSGELRPVPGILPAALSATQAGRTLIAPSGNAGELGLLPAPRPFIAPS
LLAVCAFLSENATLERPARCLPSNDYAQQGDMADIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLAYRLPGILPPMT
SDEALAQAAISSLAYPGSTQTRYGVRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRAQIKVSFPARVQLVAAMNPSNAGFGSSAGGRTTPNQVLRYLSRLSGPLLDRFDLSIDVPLLPAGVLASQRA
TGEDSATLRQRVTAVRDRQYARSGQLNAHLEGAERDRVCRLSTHDAQFLEQALTRLGLSVRAWHRLLKVARTLADMEGVE
TIAQRHLAEALSYRAVDRLLQTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=706968 NMD88_RS16200 WP_047060668.1 3506876..3508396(+) (comM) [Edwardsiella tarda strain GT109]
ATGACACTGGCCAGCGTATACACCCGTGCCGCCCTCGGCATGCAAGCACCCGAAGTCAGGATCGAGGCACATATCGGCAA
TGGATTGCCGGGTTTTACTCTGGTTGGCCTCCCAGAGACGGCGGTGCGTGAGGCAAAAGATCGTGTGCGTTGTGCCATCC
TAAACAGCGGATTCCAGTTTCCGGCTAAGCGCATCACCCTCAACCTGGCTCCCGCCGACCTACCGAAGGAGGGTGGTCGT
TACGATCTTCCCATGGCACTGGCCCTATTGCTCGCTGCAGGGCAACTCTCCAGCGTGCACGCCGAGCATCAATATGAGTT
TATGGGTGAGCTCGCCCTCTCCGGTGAACTCCGCCCAGTACCCGGTATTCTACCGGCCGCACTGAGTGCCACACAGGCGG
GGCGAACCTTAATCGCCCCCAGTGGCAACGCCGGTGAGCTCGGGCTGTTGCCTGCACCGCGTCCCTTCATCGCCCCATCC
CTACTTGCCGTCTGCGCCTTCCTCAGTGAAAACGCCACATTGGAAAGACCAGCGCGCTGTCTACCCAGTAACGACTATGC
ACAGCAGGGGGACATGGCTGATATCATCGGTCAAGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCCGCCGGAGGGCATA
ATCTGCTACTGCTTGGACCACCGGGTACCGGTAAAACGATGCTGGCCTATCGCCTACCGGGGATCCTGCCACCGATGACC
AGCGATGAGGCGTTAGCGCAGGCCGCCATCAGCAGCCTGGCATATCCAGGTTCGACGCAGACACGCTATGGCGTACGCCC
CTTTCGCGCACCGCACCATAGCGCCTCGATGGCAGCGCTGATCGGCGGCGGATCCTTGCCGCGTCCTGGAGAGATCTCTC
TGGCGCATCACGGCGTACTCTTCCTGGATGAATTAGCCGAGTTCGATCGACGTACCTTAGATGCACTGCGCGAGCCGTTA
GAGTCAGGTGTTGTCCACCTCTCCCGTGCCCAGATCAAAGTCAGCTTTCCCGCCCGCGTACAATTGGTTGCGGCGATGAA
TCCCAGCAATGCGGGATTTGGGAGCAGTGCGGGAGGACGCACCACACCGAATCAGGTACTGCGCTACCTCTCTCGCCTTT
CTGGGCCGCTGCTCGACCGCTTCGATCTCTCGATTGATGTCCCCCTATTACCCGCGGGAGTATTGGCCAGCCAACGAGCG
ACGGGCGAAGACAGTGCCACACTACGCCAACGCGTTACCGCTGTCCGTGATCGGCAGTATGCTCGCAGTGGTCAGTTGAA
TGCTCATCTCGAGGGCGCAGAGCGCGATCGTGTCTGCCGCCTGAGTACACACGATGCACAATTTCTAGAACAGGCTCTGA
CACGCCTCGGTTTATCGGTACGCGCTTGGCACCGGCTGCTCAAGGTCGCTCGTACACTCGCGGACATGGAGGGCGTCGAG
ACTATCGCCCAACGCCATCTGGCTGAAGCGCTGAGCTATCGCGCCGTCGATCGGCTCTTACAGACATTGCAACGGGGGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.847

99.407

0.585
  comM Vibrio campbellii strain DS40M4

57.455

99.407

0.571
  comM Haemophilus influenzae Rd KW20

56.805

100

0.569
  comM Glaesserella parasuis strain SC1401

55.315

100

0.555
  comM Legionella pneumophila str. Paris

47.094

98.617

0.464
  comM Legionella pneumophila strain ERS1305867

47.094

98.617

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.307

100

0.435