Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD89_RS16200 Genome accession   NZ_CP100786
Coordinates   3510516..3512036 (+) Length   506 a.a.
NCBI ID   WP_370548041.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT111     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3505516..3517036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD89_RS16175 (NMD89_16130) - 3505710..3506639 (-) 930 WP_005290114.1 branched-chain amino acid transaminase -
  NMD89_RS16180 (NMD89_16135) ilvM 3506689..3506979 (-) 291 WP_370548039.1 acetolactate synthase 2 small subunit -
  NMD89_RS16185 (NMD89_16140) ilvG 3506976..3508625 (-) 1650 WP_370548040.1 acetolactate synthase 2 catalytic subunit -
  NMD89_RS16190 (NMD89_16145) ilvL 3508764..3508862 (-) 99 WP_071526333.1 ilv operon leader peptide -
  NMD89_RS16195 (NMD89_16150) - 3509013..3510227 (-) 1215 WP_098142765.1 MFS transporter -
  NMD89_RS16200 (NMD89_16155) comM 3510516..3512036 (+) 1521 WP_370548041.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD89_RS16205 (NMD89_16160) tdh 3512102..3513127 (-) 1026 WP_035597589.1 L-threonine 3-dehydrogenase -
  NMD89_RS16210 (NMD89_16165) - 3513137..3514333 (-) 1197 WP_370548042.1 glycine C-acetyltransferase -
  NMD89_RS16215 (NMD89_16170) rfaD 3514640..3515569 (+) 930 WP_005290097.1 ADP-glyceromanno-heptose 6-epimerase -
  NMD89_RS16220 (NMD89_16175) rfaF 3515593..3516669 (+) 1077 WP_370548043.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53989.06 Da        Isoelectric Point: 9.6716

>NTDB_id=706948 NMD89_RS16200 WP_370548041.1 3510516..3512036(+) (comM) [Edwardsiella tarda strain GT111]
MTLASVYTRAALGMQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLSSVHAEHQYEFMGELALSGELRPVPGILPAALSATQAGRTLIAPSGNAGELGLLPAPRPFIAPS
LLAVCAFLSKNATLERPARCLPSNDYAQQGDMADIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLAYRLPGILPPMT
SDEALAQAAISSLAYPGSTQTRYGVRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRAQIKVSFPARVQLVAAMNPSNAGFGSSAGGRTTPNQVLRYLSRLSGPLLDRFDLSIDVPLLPAGVLASQRA
TGEDSATLRQRVTAVRDRQYARSGQLNAHLEGAERDRVCRLSTHDAQFLEQALTRLGLSVRAWHRLLKVARTLADMEGVE
TIAQRHLAEALSYRAVDRLLQTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=706948 NMD89_RS16200 WP_370548041.1 3510516..3512036(+) (comM) [Edwardsiella tarda strain GT111]
ATGACACTGGCCAGCGTATACACCCGTGCCGCCCTCGGCATGCAAGCCCCCGAAGTCAGGATCGAGGCACATATCGGCAA
TGGATTGCCGGGTTTTACTCTGGTTGGCCTCCCAGAGACGGCGGTGCGTGAGGCAAAAGATCGTGTGCGTTGTGCCATCC
TAAACAGCGGATTCCAGTTTCCGGCTAAGCGCATCACCCTCAACCTGGCTCCCGCCGACCTACCGAAGGAGGGTGGTCGT
TACGATCTTCCCATGGCACTGGCCCTATTGCTCGCTGCAGGGCAACTCTCCAGCGTGCACGCCGAGCATCAATATGAGTT
TATGGGTGAGCTCGCCCTCTCCGGTGAACTCCGCCCAGTACCCGGTATTCTACCGGCCGCACTGAGTGCCACACAGGCGG
GGCGAACCTTAATCGCCCCCAGTGGCAACGCCGGTGAGCTCGGGCTGTTGCCTGCACCGCGTCCCTTCATCGCCCCATCC
CTACTTGCCGTCTGCGCCTTCCTCAGTAAAAACGCCACATTGGAAAGACCAGCGCGCTGTCTACCCAGTAACGACTATGC
ACAGCAGGGGGACATGGCTGATATCATCGGTCAAGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCCGCCGGAGGGCATA
ATCTGCTACTGCTTGGACCACCGGGTACCGGTAAAACGATGCTGGCCTATCGCCTACCGGGGATCCTGCCACCGATGACC
AGCGATGAGGCGTTAGCGCAGGCCGCCATCAGCAGCCTGGCATATCCAGGTTCGACGCAGACACGCTATGGCGTACGCCC
CTTTCGCGCACCGCACCATAGCGCCTCGATGGCAGCGCTGATCGGCGGCGGATCCTTGCCGCGTCCTGGAGAGATCTCTC
TGGCGCATCACGGCGTACTCTTCCTTGATGAATTAGCCGAGTTCGATCGACGTACCTTAGATGCACTGCGCGAGCCGTTA
GAGTCAGGTGTTGTCCACCTCTCCCGTGCCCAGATCAAAGTCAGCTTTCCCGCCCGCGTACAATTGGTTGCGGCGATGAA
TCCCAGCAATGCGGGATTTGGGAGCAGTGCGGGAGGACGCACCACACCGAATCAGGTACTGCGCTACCTCTCTCGCCTTT
CTGGGCCGCTGCTCGACCGCTTCGATCTCTCGATTGATGTCCCCCTATTACCCGCGGGAGTATTGGCCAGCCAACGAGCG
ACGGGCGAAGACAGTGCCACACTACGCCAACGCGTTACCGCTGTCCGTGATCGGCAGTATGCTCGCAGTGGTCAGTTGAA
TGCTCATCTCGAGGGCGCAGAGCGCGATCGTGTCTGCCGCCTGAGTACACACGATGCACAATTTCTAGAACAGGCCCTGA
CACGCCTCGGTTTATCGGTACGCGCTTGGCACCGGCTGCTCAAGGTCGCTCGTACACTCGCGGACATGGAGGGCGTCGAG
ACTATCGCCCAACGCCATCTGGCTGAAGCGCTGAGCTATCGCGCCGTCGATCGGCTCTTACAGACATTGCAACGGGGGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.847

99.407

0.585
  comM Vibrio campbellii strain DS40M4

57.455

99.407

0.571
  comM Haemophilus influenzae Rd KW20

56.805

100

0.569
  comM Glaesserella parasuis strain SC1401

55.315

100

0.555
  comM Legionella pneumophila str. Paris

47.094

98.617

0.464
  comM Legionella pneumophila strain ERS1305867

47.094

98.617

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.433