Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NMD96_RS16885 Genome accession   NZ_CP100768
Coordinates   3617159..3618679 (+) Length   506 a.a.
NCBI ID   WP_370556030.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT168     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3612159..3623679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD96_RS16860 (NMD96_16825) - 3612353..3613282 (-) 930 WP_035607899.1 branched-chain amino acid transaminase -
  NMD96_RS16865 (NMD96_16830) ilvM 3613332..3613622 (-) 291 WP_005290111.1 acetolactate synthase 2 small subunit -
  NMD96_RS16870 (NMD96_16835) ilvG 3613619..3615268 (-) 1650 WP_370556029.1 acetolactate synthase 2 catalytic subunit -
  NMD96_RS16875 (NMD96_16840) ilvL 3615407..3615505 (-) 99 WP_071523989.1 ilv operon leader peptide -
  NMD96_RS16880 (NMD96_16845) - 3615656..3616870 (-) 1215 WP_035607905.1 MFS transporter -
  NMD96_RS16885 (NMD96_16850) comM 3617159..3618679 (+) 1521 WP_370556030.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMD96_RS16890 (NMD96_16855) tdh 3618745..3619770 (-) 1026 WP_370556031.1 L-threonine 3-dehydrogenase -
  NMD96_RS16895 (NMD96_16860) kbl 3619780..3620976 (-) 1197 WP_370556032.1 glycine C-acetyltransferase -
  NMD96_RS16900 (NMD96_16865) rfaD 3621283..3622212 (+) 930 WP_035607915.1 ADP-glyceromanno-heptose 6-epimerase -
  NMD96_RS16905 (NMD96_16870) rfaF 3622236..3623312 (+) 1077 WP_035597595.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54104.19 Da        Isoelectric Point: 9.3006

>NTDB_id=706824 NMD96_RS16885 WP_370556030.1 3617159..3618679(+) (comM) [Edwardsiella tarda strain GT168]
MTLASVYTRAALGMQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLTSVHAEHQYEFMGELALSGELRPVPGILPAALSATQAGRTLIAPSGNADELGLLPAPRPFIAPS
LLAVCAFLSESAILERPARCLPSNDYAQQGDMADIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLAYRLAGILPPMT
SDEALAQAAISSLAYPGSTQTRYGIRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRAQIKVSFPARVQLVAAMNPSNAGFGSRAGGRTTPNQVLRYLSRLSGPLLDRFDLSIDVPLLPAGVLASQRA
TGEDSATLRQRVTAVRDRQYARSGQLNAHLEGAERDRVCRLSTHDAQFLEQALTRLGLSVRAWHRLLKVARTLADMEGVE
TIAQRHLAEALSYRAVDRLLQTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=706824 NMD96_RS16885 WP_370556030.1 3617159..3618679(+) (comM) [Edwardsiella tarda strain GT168]
ATGACACTGGCCAGTGTATACACCCGTGCCGCCCTCGGCATGCAAGCCCCCGAAGTCAGGATCGAGGCACATATCGGCAA
TGGATTGCCGGGTTTTACTCTGGTTGGCCTCCCGGAGACGGCGGTGCGTGAGGCGAAAGATCGAGTGCGTTGTGCCATCC
TAAACAGCGGATTCCAGTTTCCGGCTAAGCGCATCACCCTCAACCTGGCTCCCGCCGACCTACCGAAGGAGGGCGGTCGC
TACGATCTTCCCATGGCACTGGCCCTATTGCTCGCCGCAGGGCAACTCACCAGCGTGCACGCCGAGCATCAATATGAGTT
TATGGGTGAGCTCGCCCTCTCCGGTGAACTCCGCCCGGTACCCGGTATTCTACCGGCCGCGCTGAGTGCCACACAGGCTG
GGCGAACCTTAATCGCCCCCAGTGGCAACGCCGATGAGCTCGGGCTGTTGCCTGCACCGCGTCCCTTCATCGCCCCATCC
CTACTTGCCGTCTGCGCCTTCCTCAGTGAAAGCGCCATATTGGAAAGACCGGCGCGCTGTCTACCCAGTAACGACTATGC
ACAGCAGGGGGACATGGCTGATATCATCGGCCAAGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCCGCCGGGGGGCATA
ATCTGCTACTGCTTGGACCACCGGGTACCGGTAAAACGATGCTGGCCTATCGCCTAGCGGGGATCCTGCCACCGATGACC
AGCGATGAGGCGTTAGCGCAGGCCGCCATCAGCAGCCTGGCATATCCAGGTTCGACGCAGACACGCTATGGCATACGCCC
CTTTCGTGCGCCGCACCATAGCGCCTCGATGGCGGCCCTGATCGGCGGCGGATCCTTGCCGCGTCCTGGAGAGATCTCTC
TGGCGCATCACGGCGTGCTCTTCCTTGATGAATTAGCCGAGTTCGATCGACGTACCTTAGATGCACTGCGCGAGCCGTTA
GAGTCAGGTGTTGTCCACCTCTCCCGCGCCCAGATCAAAGTCAGCTTTCCCGCCCGCGTACAATTGGTAGCGGCGATGAA
TCCCAGCAATGCGGGATTTGGGAGCCGTGCGGGAGGACGCACCACACCGAATCAGGTGCTGCGCTACCTCTCTCGCCTTT
CTGGGCCGCTGCTCGACCGCTTCGATCTCTCGATTGATGTCCCCCTATTACCCGCGGGAGTATTGGCCAGCCAACGAGCG
ACGGGCGAAGACAGTGCCACACTACGTCAACGCGTTACCGCTGTCCGTGATCGGCAGTATGCTCGCAGTGGCCAGTTGAA
TGCTCATCTCGAGGGCGCAGAACGCGATCGTGTCTGCCGCCTGAGTACACACGATGCACAATTTCTAGAACAGGCCCTGA
CACGCCTCGGTTTATCGGTACGCGCTTGGCACCGGCTGCTCAAGGTCGCTCGTACACTCGCGGACATGGAGGGCGTCGAG
ACTATCGCCCAACGCCATCTGGCTGAAGCGCTGAGCTATCGCGCCGTCGATCGGCTCTTACAGACATTGCAACGGGGGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.847

99.407

0.585
  comM Vibrio campbellii strain DS40M4

57.654

99.407

0.573
  comM Haemophilus influenzae Rd KW20

56.805

100

0.569
  comM Glaesserella parasuis strain SC1401

55.512

100

0.557
  comM Legionella pneumophila str. Paris

47.094

98.617

0.464
  comM Legionella pneumophila strain ERS1305867

47.094

98.617

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.433