Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NLL86_RS26760 Genome accession   NZ_CP100660
Coordinates   5806014..5807504 (+) Length   496 a.a.
NCBI ID   WP_254482267.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain ZL22     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5801014..5812504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLL86_RS26740 (NLL86_26740) - 5801385..5802719 (-) 1335 WP_254482265.1 ammonium transporter -
  NLL86_RS26745 (NLL86_26745) glnK 5802766..5803104 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  NLL86_RS26750 (NLL86_26750) - 5803480..5803743 (+) 264 WP_060479960.1 accessory factor UbiK family protein -
  NLL86_RS26755 (NLL86_26755) - 5803786..5805798 (-) 2013 WP_254482266.1 DUF4034 domain-containing protein -
  NLL86_RS26760 (NLL86_26760) comM 5806014..5807504 (+) 1491 WP_254482267.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NLL86_RS26765 (NLL86_26765) - 5807534..5807962 (-) 429 WP_254482268.1 DoxX family protein -
  NLL86_RS26770 (NLL86_26770) - 5808036..5808401 (-) 366 WP_254482269.1 response regulator transcription factor -
  NLL86_RS26775 (NLL86_26775) - 5808398..5809378 (-) 981 WP_254482270.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52839.50 Da        Isoelectric Point: 7.5427

>NTDB_id=706123 NLL86_RS26760 WP_254482267.1 5806014..5807504(+) (comM) [Pseudomonas fluorescens strain ZL22]
MSLAIVHSRAQVGVQAPAVSVETHLANGLPNLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPLPALAELECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLAPFAANGLILEQQPYPDLSEVQGQVAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
NEALEVAAIRSVSGHTPLNSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARETTTLSHQPSG
ETSADVAAKVAEAREVQQRRQGCANAFLDLDGLRSHCQLAAADQAWLESACERLTLSLRAAHRLLKVARTLADLEGSQAI
RRGHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=706123 NLL86_RS26760 WP_254482267.1 5806014..5807504(+) (comM) [Pseudomonas fluorescens strain ZL22]
ATGTCCCTCGCCATCGTCCATAGCCGCGCCCAGGTCGGCGTGCAGGCCCCGGCGGTCAGCGTCGAAACGCACCTGGCCAA
CGGCCTGCCCAATCTCACCCTGGTCGGCCTGCCCGAAACCACGGTCAAGGAGAGCAAGGACCGTGTGCGCAGCGCGATCG
TCAATTCCGGGCTGAATTACCCGCAGCGGCGCATCACCCAGAACCTCGCCCCGGCCGACCTGCCCAAGGATGGCGGGCGT
TATGACCTGGCTATCGCCCTGGGCATCCTCGCCGCCGATGGCCAGGTGCCGTTACCAGCGCTGGCCGAACTGGAATGCCT
GGGCGAGCTGGCCCTGTCGGGCAAGCTACGCCCGGTGCAGGGCGTGTTGCCAGCAGCACTGGCGGCGCGCGAGGCCGGCC
GGGCGCTGGTGGTGCCCCGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGCTTGTGGTGTATGCGGTAGGGCACCTG
CTCGAGTTGGTGGCGCACCTCAACGGGCAGGTGCCGCTAGCCCCGTTTGCCGCCAATGGCCTGATCCTTGAGCAACAGCC
TTATCCGGACCTCAGTGAGGTCCAGGGCCAGGTCGCGGCCAAGCGGGCACTGCTGTTAGCCGCAGCCGGGGCCCATAACT
TGCTGTTCACCGGGCCACCCGGCACGGGCAAGACCCTGCTCGCCAGCCGCCTCCCCGGCCTGCTGCCGCCTCTGGATGAA
AATGAGGCGCTGGAGGTCGCGGCGATCCGCTCGGTCAGTGGCCACACGCCGCTGAACAGCTGGCCGCAGCGGCCGTTTCG
CCACCCGCACCATTCTGCCTCAGGCCCAGCGCTGGTAGGTGGGAGCAGTCGGCCGCAGCCAGGCGAAATCACCTTGGCGC
ACCATGGCGTGCTGTTTCTCGACGAGCTGCCGGAGTTCGAAAGACGCGTACTGGAAGTGCTGCGCGAGCCGCTGGAATCG
GGCGAGATCGTGATTGCCCGGGCGCGCGACAAGGTGCGCTTCCCGGCGCGCTTCCAACTGGTGGCGGCCATGAACCCTTG
CCCTTGCGGCTACCTGGGTGACCCTACCGGGCGCTGCCGCTGCAGCACCGAGCAGATCGCACGGTATCGCAACAAGCTGT
CAGGGCCATTGCTGGACCGCATCGACTTGCACCTGACCGTGGCCCGCGAGACCACCACGCTCAGCCACCAGCCAAGCGGG
GAAACCAGTGCCGACGTGGCCGCCAAGGTGGCCGAGGCCCGCGAAGTGCAGCAGCGACGTCAAGGCTGCGCCAATGCGTT
TCTGGACCTGGACGGGTTGCGCAGCCATTGTCAGCTGGCAGCGGCAGACCAGGCTTGGCTGGAAAGCGCCTGCGAGCGGC
TGACGCTTTCTTTACGGGCGGCGCACCGGCTGTTGAAGGTTGCACGTACATTGGCGGATCTGGAAGGTAGCCAGGCGATC
CGCCGGGGGCATCTGGCCGAGGCCTTGCAGTACCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.25

100

0.563
  comM Haemophilus influenzae Rd KW20

55.6

100

0.56
  comM Vibrio cholerae strain A1552

55.758

99.798

0.556
  comM Glaesserella parasuis strain SC1401

53.968

100

0.548
  comM Legionella pneumophila str. Paris

49.395

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.476