Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NL778_RS00975 Genome accession   NZ_CP100652
Coordinates   200113..201603 (-) Length   496 a.a.
NCBI ID   WP_012312183.1    Uniprot ID   -
Organism   Pseudomonas putida strain HSM-C2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 195113..206603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL778_RS00955 (NL778_00955) - 196617..197609 (+) 993 WP_254466974.1 response regulator -
  NL778_RS00960 (NL778_00960) - 197606..197980 (+) 375 WP_254466975.1 response regulator transcription factor -
  NL778_RS00965 (NL778_00965) - 198186..199493 (-) 1308 WP_012312181.1 Nramp family divalent metal transporter -
  NL778_RS00970 (NL778_00970) - 199713..199973 (-) 261 WP_012312182.1 DUF2790 domain-containing protein -
  NL778_RS00975 (NL778_00975) comM 200113..201603 (-) 1491 WP_012312183.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NL778_RS00980 (NL778_00980) - 201734..202153 (+) 420 WP_204920662.1 hypothetical protein -
  NL778_RS00985 (NL778_00985) - 202223..202417 (+) 195 Protein_197 IS66 family transposase -
  NL778_RS00990 (NL778_00990) - 202679..202840 (-) 162 Protein_198 hypothetical protein -
  NL778_RS00995 (NL778_00995) - 203434..203766 (-) 333 WP_204919336.1 DUF6572 domain-containing protein -
  NL778_RS01000 (NL778_01000) - 204117..204509 (-) 393 WP_204919338.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53110.87 Da        Isoelectric Point: 7.5644

>NTDB_id=706049 NL778_RS00975 WP_012312183.1 200113..201603(-) (comM) [Pseudomonas putida strain HSM-C2]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPVATLTDIECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPFAANGLLLHSRPYPDLSEVQGQVAAKRALLLAASGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHKPLDSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIQRYRNKLSGPLLDRIDLHLTVARETTTLNNQPCG
ETSADVAARVAEAREVQHRRQGCANAFLDLEGLRRHCELCAADQAWLESACERLTLSLRAAHRLLKVARTLADLEGASTI
ARAHLAEALQYRPGSH

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=706049 NL778_RS00975 WP_012312183.1 200113..201603(-) (comM) [Pseudomonas putida strain HSM-C2]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTTGGCGTGCAGGCACCTGCTGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCCACCTCACCCTGGTCGGCCTGCCCGAAACCACCGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAACTACCCGCAAAGGCGCATCACCCAAAACCTGGCACCGGCAGACCTGCCCAAGGACGGCGGGCGC
TACGACCTGGCCATCGCCCTGGGCATCCTTGCCGCTGACGGCCAGGTGCCGGTGGCCACGTTGACCGACATCGAATGCCT
GGGCGAGCTGGCGCTTTCGGGCAAGCTGCGCCCGGTGCAGGGCGTGCTGCCTGCCGCACTGGCGGCGCGCGAGGCTGGCC
GGGCACTGGTGGTGCCGCGGGAAAACGCCGAAGAGGCGAGCCTGGCGGGTGGGCTGGTGGTGTACGCAGTGGGGCACCTG
CTGGAACTGGTCGCTCACCTCAACGGCCAGGTGCCGCTGCCCCCCTTTGCCGCCAACGGTCTACTGCTGCACAGCCGCCC
TTATCCCGACCTCAGCGAGGTGCAGGGCCAGGTGGCCGCCAAGCGTGCCTTGCTGCTGGCGGCTTCAGGTGCGCATAACC
TGCTGTTCACGGGGCCGCCCGGCACGGGCAAGACACTACTGGCCAGCCGCCTGCCCGGTCTGCTGCCGCCGCTGGATGAG
CATGAAGCGCTGGAAGTGGCAGCCATCCAGTCGGTAAGCGGGCACAAACCGCTTGATAGCTGGCCGCAACGGCCGTTTCG
CCATCCGCACCACTCAGCGTCCGGGCCCGCGCTGGTAGGCGGAAGCAGCCGGCCACAGCCAGGTGAAATCACCCTGGCGC
ACCATGGGGTACTGTTTCTGGATGAGCTTCCGGAGTTCGAGCGCCGTGTACTTGAGGTGCTTCGCGAGCCGCTGGAGTCT
GGCGAGATCGTGATTGCCCGGGCACGGGACAAAGTACGCTTTCCGGCGCGCTTCCAACTGGTGGCGGCCATGAACCCGTG
CCCTTGCGGTTACCTGGGCGACCCCACGGGCCGCTGCCGCTGCAGCACCGAACAGATCCAGCGCTACCGCAACAAGCTTT
CCGGCCCGCTACTGGACCGCATCGACCTGCACCTGACCGTGGCGCGCGAAACCACCACGCTCAACAATCAACCTTGCGGC
GAGACAAGTGCCGATGTGGCGGCCCGGGTGGCCGAGGCGCGCGAGGTGCAGCACCGGCGACAAGGCTGTGCCAATGCGTT
TCTGGACCTTGAGGGGCTACGACGGCACTGTGAATTGTGCGCTGCCGACCAGGCCTGGCTGGAGAGTGCCTGCGAGCGCC
TGACGCTTTCCCTGCGCGCCGCACACAGGCTGTTGAAGGTAGCACGCACGCTGGCCGACCTGGAGGGGGCCAGCACGATT
GCCAGGGCGCATCTGGCCGAAGCCCTGCAGTACCGGCCGGGAAGTCATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.422

100

0.556
  comM Vibrio cholerae strain A1552

55.556

99.798

0.554
  comM Haemophilus influenzae Rd KW20

55

100

0.554
  comM Glaesserella parasuis strain SC1401

54.183

100

0.548
  comM Legionella pneumophila str. Paris

49

100

0.494
  comM Legionella pneumophila strain ERS1305867

49

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.117

100

0.478