Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NKJ47_RS02880 Genome accession   NZ_CP100647
Coordinates   687778..689301 (-) Length   507 a.a.
NCBI ID   WP_254460052.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain DD13     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 682778..694301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKJ47_RS02865 - 683790..684878 (+) 1089 WP_254460050.1 carotenoid 1,2-hydratase -
  NKJ47_RS02870 - 684936..686033 (+) 1098 WP_254460051.1 lipocalin-like domain-containing protein -
  NKJ47_RS02875 - 686301..687224 (-) 924 WP_254458495.1 IS110 family transposase -
  NKJ47_RS02880 comM 687778..689301 (-) 1524 WP_254460052.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NKJ47_RS02885 - 689315..689584 (-) 270 WP_254460053.1 accessory factor UbiK family protein -
  NKJ47_RS02890 - 689761..690099 (+) 339 WP_010341856.1 P-II family nitrogen regulator -
  NKJ47_RS02895 - 690379..690531 (-) 153 WP_254460054.1 hypothetical protein -
  NKJ47_RS02900 speE 690570..691421 (-) 852 WP_254460055.1 polyamine aminopropyltransferase -
  NKJ47_RS02905 speA 691795..693684 (+) 1890 WP_254460056.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 53903.63 Da        Isoelectric Point: 8.7061

>NTDB_id=705943 NKJ47_RS02880 WP_254460052.1 687778..689301(-) (comM) [Xanthomonas sacchari strain DD13]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAALLCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQGLGQYEFLGELALTGELRPVDGVLPAALAAAQAGRTLIVPADNGAEAALAQHVQAFTARTL
LEVCGLLNGSKTLPAATAPPAVAAPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPAASEAE
ALESAAIASVSGRGLDPARWRQRPYRAPHHTASAVSLVGGGTHPRPGEISLAHHGVLFLDELPEWNRHALEVLREPLESG
QVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDPSGRCRCSEEAVRRYRARISGPLLDRIDLHVEVPRLPPQALRADAPP
GETSAAVRERVELARQRQQRRAGRPNGQLGHSETLRDCRLQPRDEALLEQAIERLRLSARSLHRILRVARTIADLDASDA
IATAHLTEAIAYRQLDRGEPAPVARSA

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=705943 NKJ47_RS02880 WP_254460052.1 687778..689301(-) (comM) [Xanthomonas sacchari strain DD13]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAAGTCCATCTGTCCGG
CGGCCTGCCGGCCACCCAGATCGTCGGCCTGCCCGAGGCGGCGGTGCGCGAGTCGCGCGATCGGGTCCGCGCCGCGCTGC
TGTGCGCGCAGTACGAATTCCCGGCACGGCGGATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGAGGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCGCCGGCCAGCTCGACCCGCAGGGGCTCGGCCAATACGAATTCCT
CGGCGAACTGGCCCTGACCGGCGAATTGCGCCCAGTCGACGGCGTCCTGCCGGCCGCGCTGGCCGCGGCACAGGCAGGAC
GTACCCTGATCGTGCCGGCCGACAACGGCGCCGAGGCCGCACTGGCGCAACACGTGCAGGCGTTCACCGCGCGGACCCTG
CTGGAGGTCTGCGGGTTGCTCAACGGCAGCAAGACCCTGCCCGCGGCGACGGCACCGCCGGCCGTCGCCGCGCCCTTTCC
CGACCTGAGCGACGTGCGCGGCCAGGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCGGCCGGACATCACCACCTGCTGC
TGATCGGCAGCCCCGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGGATCCTGCCCGCGGCCAGCGAGGCCGAG
GCGCTGGAGAGCGCCGCCATCGCCTCGGTCAGCGGCCGCGGCCTGGATCCGGCGCGCTGGCGGCAACGCCCGTACCGCGC
GCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACCCATCCGCGCCCTGGCGAGATCTCCCTGGCGCACC
ACGGCGTGCTGTTCCTGGACGAGTTGCCCGAGTGGAACCGGCATGCCCTGGAAGTGCTGCGCGAACCGCTGGAGTCCGGC
CAGGTGACCGTGTCGCGCGCGGCGCGCAGCGCCGAGTTTCCCGCGCGCTTCCAGTTGGTGGCGGCGATGAATCCCTGCCC
CTGCGGCTGGGCCGGCGACCCCAGCGGCCGCTGCCGCTGCAGCGAGGAGGCGGTGCGGCGCTATCGCGCGCGCATCTCCG
GCCCGCTGCTGGATCGCATCGACCTGCACGTGGAAGTGCCGCGGCTCCCCCCGCAGGCGCTGCGCGCCGATGCGCCGCCC
GGCGAAACCAGCGCCGCCGTGCGCGAGCGCGTCGAGCTGGCGCGGCAGCGGCAACAGCGCCGGGCCGGCCGGCCCAACGG
CCAGCTCGGCCACAGCGAGACCTTGCGCGACTGTCGCCTGCAGCCGCGCGACGAGGCCTTGCTGGAACAGGCCATCGAGC
GCCTGCGGCTATCGGCACGCTCGCTGCACCGCATCCTGCGCGTGGCGCGCACCATCGCCGACCTGGACGCCAGCGATGCC
ATCGCCACTGCGCACCTGACCGAAGCCATCGCCTACCGGCAACTGGATCGCGGCGAGCCGGCGCCGGTGGCACGTAGCGC
CTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.762

99.408

0.544
  comM Vibrio cholerae strain A1552

55.11

98.422

0.542
  comM Vibrio campbellii strain DS40M4

53.908

98.422

0.531
  comM Glaesserella parasuis strain SC1401

52.976

99.408

0.527
  comM Legionella pneumophila str. Paris

50.101

98.028

0.491
  comM Legionella pneumophila strain ERS1305867

50.101

98.028

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.472

100

0.456