Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NLY38_RS01335 Genome accession   NZ_CP100553
Coordinates   270723..272216 (-) Length   497 a.a.
NCBI ID   WP_195881283.1    Uniprot ID   -
Organism   Pseudomonas hydrolytica strain KHPS2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 265723..277216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY38_RS01320 (NLY38_01320) - 266477..268150 (+) 1674 WP_003242356.1 bifunctional diguanylate cyclase/phosphodiesterase -
  NLY38_RS01325 (NLY38_01325) - 268185..269570 (-) 1386 WP_195881285.1 NorM family multidrug efflux MATE transporter -
  NLY38_RS01330 (NLY38_01330) - 269710..270627 (+) 918 WP_195881284.1 LysR substrate-binding domain-containing protein -
  NLY38_RS01335 (NLY38_01335) comM 270723..272216 (-) 1494 WP_195881283.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NLY38_RS01340 (NLY38_01340) - 272251..272511 (-) 261 WP_003242360.1 accessory factor UbiK family protein -
  NLY38_RS01345 (NLY38_01345) glnK 272922..273260 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  NLY38_RS01350 (NLY38_01350) - 273590..274840 (+) 1251 WP_011920556.1 ammonium transporter -
  NLY38_RS01355 (NLY38_01355) - 274939..275364 (+) 426 WP_003242364.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NLY38_RS01360 (NLY38_01360) sutA 275442..275765 (+) 324 WP_003242366.1 transcriptional regulator SutA -
  NLY38_RS01365 (NLY38_01365) - 275890..276591 (-) 702 WP_011920557.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52820.72 Da        Isoelectric Point: 7.9957

>NTDB_id=705813 NLY38_RS01335 WP_195881283.1 270723..272216(-) (comM) [Pseudomonas hydrolytica strain KHPS2]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILNAAFEFPNRRITLNLAPADLPKDGGR
FDLAIALGILAASGQVPAASLDEYECLGELALSGAVRPVQGVLPAALAARAAGRTLLVPAANAEEASLASGLKVLAVDHL
LQIAAHLNGSAPLAPYQAQGLLRQSLPYPDLAEVQGQLAAKRALLVAAAGSHNLLLSGPPGTGKTLLASRLPGLLPPLDE
SEALQVAAIHSVASHTPLQHWPQRPFRTPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDASNRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVARESTALEVPARD
GESTAEAAAKVARARELQLQRQGVANAFLDLPGLRQYCALSETDRHWLENACERLGLSLRAAHRVLKVARTLADLADERQ
IARTHLAEALQYRPGMG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=705813 NLY38_RS01335 WP_195881283.1 270723..272216(-) (comM) [Pseudomonas hydrolytica strain KHPS2]
ATGTCCCTGGCCATCGTTCACAGCCGCGCCCAGGTCGGCGTCGAAGCCCCGGCCGTTACCGTCGAAGCGCACCTGGCCAA
CGGTCTGCCGGCACTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGACCGCGTGCGTAGCGCCATCC
TCAACGCCGCCTTCGAATTCCCCAATCGACGCATCACCCTCAACCTGGCCCCGGCGGATCTGCCGAAGGACGGCGGTCGC
TTCGATCTGGCGATCGCCCTGGGGATTCTTGCCGCCAGCGGCCAGGTGCCGGCAGCCAGCCTCGATGAATACGAATGCCT
GGGCGAACTGGCGCTGTCCGGCGCCGTGCGCCCGGTACAGGGCGTACTGCCGGCTGCACTGGCCGCACGCGCGGCCGGCC
GCACTCTCTTGGTGCCGGCGGCCAATGCCGAGGAAGCCAGCCTGGCCTCGGGCCTGAAGGTGCTCGCCGTCGATCACCTG
CTGCAGATCGCCGCGCACCTCAACGGCAGCGCTCCGCTCGCGCCCTATCAGGCGCAGGGGCTGCTGCGCCAGAGCCTGCC
ATACCCGGACCTCGCGGAAGTCCAGGGCCAGCTGGCGGCCAAGCGCGCCCTGCTGGTCGCCGCTGCCGGCTCGCACAACC
TGCTGCTCAGCGGCCCGCCCGGCACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGCCGCTGGACGAA
AGCGAGGCACTGCAGGTCGCCGCGATCCATTCGGTGGCCAGCCATACGCCTTTGCAGCACTGGCCGCAGCGCCCCTTTCG
CACACCGCACCATAGCGCCTCGGGGCCGGCCCTGGTCGGCGGCGGCAGTCGCCCGCAGCCCGGCGAAATCACCCTGGCGC
ATCAGGGGGTGCTGTTCCTCGACGAGTTGCCCGAGTTCGACAGGAAGGTCTTGGAGGTGCTGCGCGAACCCTTGGAGAGC
GGCCATATCGTCATCGCACGGGCCCGCGACAAGGTACGCTTTCCCGCGCGCTTTCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGATGCGAGCAACCGCTGCCGCTGCACCCCGGAGCAGATCCAGCGCTACCGCGCCAAGCTGT
CCGGACCGCTGCTCGACCGCATCGACCTGCACCTGACCGTGGCGCGCGAAAGCACGGCGCTGGAGGTGCCGGCGCGGGAT
GGCGAAAGCACCGCAGAGGCGGCGGCCAAGGTGGCGCGGGCGCGCGAGTTGCAGTTGCAGCGCCAGGGCGTGGCCAACGC
CTTTCTCGACCTGCCGGGGCTGCGCCAGTACTGCGCTCTGAGCGAGACGGATCGTCACTGGCTGGAAAATGCCTGCGAAC
GCCTCGGCCTGTCGCTGCGCGCCGCCCACCGGGTGCTCAAGGTGGCGCGCACCCTGGCCGACCTGGCCGACGAGCGGCAG
ATCGCACGCACGCATCTGGCCGAGGCGCTGCAGTACCGACCCGGGATGGGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.97

99.598

0.567
  comM Vibrio campbellii strain DS40M4

56.364

99.598

0.561
  comM Glaesserella parasuis strain SC1401

55.11

100

0.553
  comM Haemophilus influenzae Rd KW20

54.4

100

0.547
  comM Legionella pneumophila str. Paris

50.098

100

0.513
  comM Legionella pneumophila strain ERS1305867

50.098

100

0.513
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.627

100

0.473